Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04946 ATGGGTTATACGAATTCGGAGTTGCATGTGCGAATCTTTGTCACCTCCTTGGTGATTCTCACGGGGACTTTCTGTGCTGGAGACACTGACCTGGTTGATGCAATCAATAGTCTCTATTTTGCTCTGGGCTCACCACCTCTTCAAGGGTGGAAGCCTGTGGGAGGAGATCCTTGTTTGGAACAGTGGCAAGGCGTGGCTTGTGTCTTCTCCAACATAACTGCCATACGACTTGCTGACATGAATTTGGGTGGACAGCTGGGCACTAATTTGAATTTCCCTTCCATTATAGAAATTGATCTTAGCAACAACCATATTGGAGGGGCCATTCCATTCACGTTGCCTCCTACAATGAGGAGCTTGTCTCTTGCAGGAAATCAGTTAAATGGGAGTATTCCAGATGCCTTATCCTTATTAACCCAATTGTCAAACTTGGATTTGTCAAATAACAACTTGAGTGGCCAGTTGCCTTCCTCAACAGGGAGTTTATCATCTCTTACCACACTACACTTGCAGAACAATCAACTTTCTGGGACCCTCTATGTTTTGCAGGACCTTCCTCTTCAGGATCTGAATATAGAGAATAATTTATTCTCTGGGCCAATTCCTCCAAAATTGTTGACTATCCCGAATTTCAGATATGATAATTTTGATCTTCCAGGAGAAGACACATGGGGAAATTTCCTACTAAAAGATGGGAATCCATTTAATACAACTATCATTCCATCACCTCCAGCTGCAGCCCCTTCACCTGTAGCCATGGCTCCATCCCCTGAGGAATCACCTTGGAAAGTGGCAAATAGTCCTTCTGCCCTGACAGCACTGATGCCTGCAAATACTGGGAAGTCTTTCATAGCTAAGAATGTCATTTGGATTGCTGGTGCATGTTTCTTAATATTCATTGCATTGGGAATTTGTCTTTTTATGTTTTGGTGCTTTAAGAGAAGGCCAAAAAAGAAAAATGCTAAGAAACCTGATGTAGGTGTTTGTGCGAAACCTTTGCATAAACCTACATGCAGTGACACTGTTTTTGAAGCAACTAATGAAGAGGAAAAAGCTATAACTTCCAAAGTAACTGAAAAACAAGTTGTGACAAGTTCTGTCAAAGTTTATACTGTTGCATCACTTCAGCAGTATACAAGTAGTTTTTCCCAAGAAAATTGTATTGGGGAAGGCACGCTTGGGCCTGTTTATAGGGCTGAGCTCCCTGATGGACAGCTATTGGCAGTGAGGAAACTGGATGCTACTGCGTCCATGGGACAAAATCATGAACAATTTCTTCAATTGGTATCCAGCATCTCAAAAATTCAGCATGCTAATATTGCAAAGCTTGTGGGCTACTGTGCTGAGTATAGCCAACGACTACTTGTATACGAGTATTACAGTAATGGGACTCTACATGATGCACTGCATGGGGATAATGAACACCGTATTGAACTTCCATGGAATGCACGCATTAAGGTGGCACTTGGAGCTGCAAGAGCTTTAGAGTATCTGCATGAGAACTTTCGGCCACCGATTGTGCATCGAAATTTTAGGTCAGCTAATGTTCTCCTAAATGAAAAGTTGGAAGTGCGTGTCTCTGATTGTGGATTGGGTCCTTTACTATCTTCTGGCTCTGCTGGTCAGGTATCTCTGTCACGGCCTCGTGGAGAGCAAATTTTGGTCAGATGGGCAGTTCCTCAACTTCATGACATTGATGCATTGTCAAAAATGGTTGACCCCTGCTTAAATGGAGCCTATCCTATCAAGTCCTTGTCACGTTTTGCAGATATTGTTTCTTCATGTATACAGCGCGAACCTGAATTCCGGCCAGCTATGTCAGAAATTGTTCAAGATCTGTTGCTAACAATGTAA 1854 0.4277 MGYTNSELHVRIFVTSLVILTGTFCAGDTDLVDAINSLYFALGSPPLQGWKPVGGDPCLEQWQGVACVFSNITAIRLADMNLGGQLGTNLNFPSIIEIDLSNNHIGGAIPFTLPPTMRSLSLAGNQLNGSIPDALSLLTQLSNLDLSNNNLSGQLPSSTGSLSSLTTLHLQNNQLSGTLYVLQDLPLQDLNIENNLFSGPIPPKLLTIPNFRYDNFDLPGEDTWGNFLLKDGNPFNTTIIPSPPAAAPSPVAMAPSPEESPWKVANSPSALTALMPANTGKSFIAKNVIWIAGACFLIFIALGICLFMFWCFKRRPKKKNAKKPDVGVCAKPLHKPTCSDTVFEATNEEEKAITSKVTEKQVVTSSVKVYTVASLQQYTSSFSQENCIGEGTLGPVYRAELPDGQLLAVRKLDATASMGQNHEQFLQLVSSISKIQHANIAKLVGYCAEYSQRLLVYEYYSNGTLHDALHGDNEHRIELPWNARIKVALGAARALEYLHENFRPPIVHRNFRSANVLLNEKLEVRVSDCGLGPLLSSGSAGQVSLSRPRGEQILVRWAVPQLHDIDALSKMVDPCLNGAYPIKSLSRFADIVSSCIQREPEFRPAMSEIVQDLLLTM. 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04946 617 Pfam Protein tyrosine and serine/threonine kinase 385 560 IPR001245 GO:0004672|GO:0006468
Seca6g04946 617 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 19 613 IPR046959 -
Seca6g04946 617 Gene3D Transferase(Phosphotransferase) domain 1 460 545 - -
Seca6g04946 617 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 28 143 - -
Seca6g04946 617 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 346 459 - -
Seca6g04946 617 PRINTS Leucine-rich repeat signature 162 175 - -
Seca6g04946 617 PRINTS Leucine-rich repeat signature 141 154 - -
Seca6g04946 617 Gene3D Transferase(Phosphotransferase) domain 1 546 616 - -
Seca6g04946 617 Gene3D Phosphorylase Kinase; domain 1 342 459 - -
Seca6g04946 617 ProSiteProfiles Protein kinase domain profile. 382 617 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04946 617 Gene3D Ribonuclease Inhibitor 30 231 IPR032675 -
Seca6g04946 617 SUPERFAMILY L domain-like 29 210 - -
Seca6g04946 617 SUPERFAMILY Protein kinase-like (PK-like) 361 614 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04946 Seca-Chr6 116885055 116891397 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04946 23 614 Strubbelig Receptor Gene Family AT4G03390 44.075 6.33e-175 514
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-V Seca6g04946 PK_Tyr_Ser-Thr 9.3e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04946 - - pvu:PHAVU_002G224200g 776.548