Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04941 ATGGAAGAGAGTAAAGTTGATAGCATCCTGCTCAGATTAATATCTGTCCCTCATCCTTTGCATTCAAGGGCTGGTGGAGTGGAGGATTTGGGTATGTATGGGCTGTGGATTGGAAACTTAGTTGCCTCATGGTATTCTGTTGTTCCAGTGCCATCAGTTACTTGGAAAGCAAAATTTGAAGTCTCTGGAAGCAGGACTGCAAAGTCTGTGTATGAATTATTTCCAGAAAGGGGTGGCCAGCAAATAGGGGACGAGGAAAAGTCGTCTCGCGAACCTTCTCAGAAACCTCCCCTGATTCTTCACGAACCTGCACCACGCCACACGCCATTCCCCTTTTTCATTTATCTCGGCCTCTGCCGAGAATGCGATTCAACCGATTGCTTTTCGATTTCGAGAATCGGCACCGCAGGTTTCGGTTTTGGGGGCGCGGCAATGATGGCGGATGAGGGATTCGACTTCCAATTGGTGGACAACGGGGACGCCGCCGATGACGATAAGCTCTTCATGGATATCGATTCCATTCTCAGCGTTCTTGATGAAGATCGCGATCCTTCCGAGAGTAGTCATGAGGATTCTTCATTGAAAGATGTTTCACCTAGTGAATCTGGCATCCTTGATAATTTTCTACTTCAAAATGATTCTGGGACCAGGGGCTCAATTTGTTTAACTGATTCTGCAGGGAATTATGTGCTTGACTGCGAACATGAAAACCAGGTACCTTCATCACAGACTTGCTCTTCCCCAAATGCTTTTGCCGGTGGTTACAGAGGCTCTTTCTCTGTGGTTGAAAGTGATGACATTTGTCACACAGAAAGGACAGGAGTTTCTAAATGTGAGATACCTACTTACAGTGTGGACACGAATATCCGTGAGGCAAATTCAAACGTTGTAGTTGTTTGTGGAAATAATTTGAATCTGAGTCTGTGGAAGGGTGTAAATGATAGCCAAGTCAAGCATGTAGGAGATGATGTAGAATCTGAATATGCTTCACACAGCTCTATCATTGAGAACGTTGATGTAACCCTTGAAGATTATGGAACATTTTTGAAAGACGGTGTTGTAGTTTCTGGGAAGCAGGAAAATGACTTGTGTACATCATTTGAAATGTCGTTTGTGGATGCTGACAGAGCAACACATGTTGCAACTTCAACTGATTCTACTATTTGTCAAGGTTCCAATGTTCCAAGTGATTTTAGTGACTACTATTCATCTTTGAACTGTTACCAGAGTATTGATGATAGACTTGATGTTTCCAACACTCCTGGTTATTTTCCTAATGGTGTTTGTCCTCAATTCTGGAAAAATGAAGAGATGACAGGGAACATGAATGTTGCAAAAACGGAGTTTTTTGCTGATACAGCACGTGTGAGTAGTGGCTTGCATTCCAGCACTACTGGTGGAATATCTGTTCAAGATGGTCAATTTTTGTTAGGAGATAGTGAATATCCTTCATTTTTTCCTGGTAATGTTCTGTTTGAAGACAGTGCATCAGTGAAACTTTCAACTTGTGCTTCATATATTTCAAGTGAAAGCCCATCAGTTCATGTCAAAGCTGAAAATAATGACCGAATTATGCCTTACCAAGATTCTTTTCACAGTGATGATGCTGAGTTAAAGGCAGGTCAAGAGGTGAAACAATTTGCTGGTATTTCCCCTACTATTAGATGCCAGGGTTATGATTTTTTCAAGCACCAGGATAGTGGTGCAATTGTAACAGCCAGAAAAGTGAATTATTACCAAGATATTATGGATGAAACTGCTAATGAATTTCCACGGAACATTGGAAACTTGAATTTGAAGTCCTTAGACTTGTCTATTGCCCGAGCATCAGTTCCCAGTGGAAAGCAGTATAATTGTGTTACAAGGGAAGGGGAGGATAAAACCATTGGACATAAAAATATTGATACTCAACTTTCAAAAAGAAGTATTGGGAGATCCAATGTTGAGGATGACTCTGATGTTTGCATTATTGAAGACATCAGTCACCCTGCACCTATCAGTCGATGTGCAGAACTTGGGAATTCCCTTAGTATGTCACAATCTTCTAGATCTGGTTATACCCAACCTTATATGTTGGGAGGCACAAGATCGAAGGCGCGTGATGAGCAATACATTTTACGAGTTGCATTGCAGGATCTATCTCAGCCAAAGTCAGAAGTTAGTCCACCAGATGGACTGCTAGCAGTTCCACTTTTACGACATCAGAAGGAAACATCAAGTCTATACTGCTCAGGGGGTATTCTTGCAGATGATCAGGGTCTTGGGAAAACGGTGTCAACTATTGCTTTAATATTAAAGGAAAGACCTCCATTGCTTAAGACATGCAGCAATGCACCAAAAAGTGAATTAGAAACTTTAAATTTGGATGCAGATGATGACCTGATTCCTGAAAATAGTATAGTGAAGAAGGAATCTAATATGTGTCAGGATACATCTAGTATAAATCCAGTCACAAGCATGAGTTTGTTGGTGCATGGGAAAGGAAGGCCATCTGCGGGAACACTTATTGTTTGTCCGACTAGTGTCCTGCGACAATGGGCTGAGGAGTTGCATAATAAAGTGACCTGCAAAGCAAATCTCTCTGTGCTAGTGTACCATGGAAGCAATCGAACTAAAGATCCTTATGAGCTTGCCAAGTATGATGTTGTTCTGACGACTTATTCAATTGTTAGCATGGAGGTCCCTAAGCAACCTCTGGTTGACAAAGATGATGAAGAAAAAGGAATTTATGAAGATCATGCTGTAGCAAGTAGGAAAAGGAAATGCCCTCCTAGTTCTAGTAGGAGTGGCAAGAAGGGATTGCATAGCACAATGCTTGAGGCTGTTGCTCGTCCTCTTGCAAAGGTGGCTTGGTTTAGAGTTGTTTTGGATGAGGCCCAGAGTATAAAGAATCACAGAACTCAAGTTGCAAGGGCCTGTTGGGGTCTTCGAGCTAAACGTAGATGGTGTTTATCAGGGACTCCCATCCAGAATGCAATTGATGATCTCTACAGTTACTTTAGATTTTTAAGATATGATCCTTATGCTGTGTACACATCATTCTGTTCCACAATTAAGATCCCTATCAACAGAAATCCATCAAAGGGGTATAGAAAGCTACAGGCTGTTTTAAAGACGATAATGTTACGTCGGACAAAAGGCACACTTCTTGATGGTGAACCTATTATTTCCTTGCCACCTAAGTTTGTAGAGTTGAAAAAAGTAGATTTTTCACAGGAGGAACGTGATTTCTATTCAAGACTTGAGGCTGATTCACGTGCACAGTTTCAGGAATATGCTGATGCTGGAACTGTGAAGCAAAATTATGTCAACATTTTGTTAATGCTTCTGCGCCTTAGACAAGCTTGCGATCACCCTTTGCTTGTCAAGCGTTACAATTCTAACTCTCTTTGGAAATCTTCGGTTGAAATGGCCAAGAAGCTTCCTCAGGAACAACAATTATGTCTTCTAAAATGTTTAGAGGCTTCCTTGGCCCTCTGTGGTATCTGTAATGATCCTCCTGAAGATGCTGTTGTATCAGTCTGTGGTCATGTTTTTTGTAACCAGTGCATTTGCGAACATCTTACTGGTGATGACAATCAGTGCCCTACTACAAATTGCAGAACACGACTAAGCATGTCTTCGGTGTTTTCCAAAGCTACATTGAACTGTTCTTTATCTGACCAGGCTTGTGATCATTTGCCTGGTTGCTCCGGTTCTGAGGTGGAGGAATCTGAGCCTTGTTCTCAGACTCAGCCATGTGATTCTTCAAAAATAAAGGCTGCACTTGAGGTGTTGCAGTCATTGTCTAAGCCACAATGCCATAATTCTGAAAAAAATTGTGTACAGAGCACTTTTGGAGAAAGTAGTACTGATTGCCTTGGGAGCTCCTCTTGTCCTGACAATGGGAAATCCTGCAATGATTTTCCTGAGCATCAAAATGTGTTTATAGAGAGAAGCTCTAATGATTCAGTTGGTTCTGTAGGGGAGAAAGCTATAGTGTTTTCTCAGTGGACGAGGATGCTGGATTTGCTTGAAGCATGTCTTAAGAAATCTTCAATTCAATATAGAAGACTTGATGGAACAATGTCAGTCATTGCTAGAGATAAAGCTGTTAAAGATTTTAATACACTCCCTGAGGTATCAGTTATGATTATGTCTTTGAAGGCTGCCAGTCTTGGTCTGAACATGGTGGCAGCTTGCCATGTTCTAATGCTAGATCTATGGTGGAATCCTACAACTGAAGATCAAGCAATAGACAGAGCGCATCGAATTGGACAGACTCGTCCTGTTACAGTCTTGCGGTTAACTGTGAAAGATACAGTTGAAGACCGAATTTTAGCTCTGCAGCAAAAGAAGCGAAAGATGGTTGCATCTGCGTTTGGAGAGGATGGAACTGGTGGTCGTCAAAGCCGCCTTACAGTGGATGATTTAAAATACTTGTTCATGATGTGA 4434 0.4166 MEESKVDSILLRLISVPHPLHSRAGGVEDLGMYGLWIGNLVASWYSVVPVPSVTWKAKFEVSGSRTAKSVYELFPERGGQQIGDEEKSSREPSQKPPLILHEPAPRHTPFPFFIYLGLCRECDSTDCFSISRIGTAGFGFGGAAMMADEGFDFQLVDNGDAADDDKLFMDIDSILSVLDEDRDPSESSHEDSSLKDVSPSESGILDNFLLQNDSGTRGSICLTDSAGNYVLDCEHENQVPSSQTCSSPNAFAGGYRGSFSVVESDDICHTERTGVSKCEIPTYSVDTNIREANSNVVVVCGNNLNLSLWKGVNDSQVKHVGDDVESEYASHSSIIENVDVTLEDYGTFLKDGVVVSGKQENDLCTSFEMSFVDADRATHVATSTDSTICQGSNVPSDFSDYYSSLNCYQSIDDRLDVSNTPGYFPNGVCPQFWKNEEMTGNMNVAKTEFFADTARVSSGLHSSTTGGISVQDGQFLLGDSEYPSFFPGNVLFEDSASVKLSTCASYISSESPSVHVKAENNDRIMPYQDSFHSDDAELKAGQEVKQFAGISPTIRCQGYDFFKHQDSGAIVTARKVNYYQDIMDETANEFPRNIGNLNLKSLDLSIARASVPSGKQYNCVTREGEDKTIGHKNIDTQLSKRSIGRSNVEDDSDVCIIEDISHPAPISRCAELGNSLSMSQSSRSGYTQPYMLGGTRSKARDEQYILRVALQDLSQPKSEVSPPDGLLAVPLLRHQKETSSLYCSGGILADDQGLGKTVSTIALILKERPPLLKTCSNAPKSELETLNLDADDDLIPENSIVKKESNMCQDTSSINPVTSMSLLVHGKGRPSAGTLIVCPTSVLRQWAEELHNKVTCKANLSVLVYHGSNRTKDPYELAKYDVVLTTYSIVSMEVPKQPLVDKDDEEKGIYEDHAVASRKRKCPPSSSRSGKKGLHSTMLEAVARPLAKVAWFRVVLDEAQSIKNHRTQVARACWGLRAKRRWCLSGTPIQNAIDDLYSYFRFLRYDPYAVYTSFCSTIKIPINRNPSKGYRKLQAVLKTIMLRRTKGTLLDGEPIISLPPKFVELKKVDFSQEERDFYSRLEADSRAQFQEYADAGTVKQNYVNILLMLLRLRQACDHPLLVKRYNSNSLWKSSVEMAKKLPQEQQLCLLKCLEASLALCGICNDPPEDAVVSVCGHVFCNQCICEHLTGDDNQCPTTNCRTRLSMSSVFSKATLNCSLSDQACDHLPGCSGSEVEESEPCSQTQPCDSSKIKAALEVLQSLSKPQCHNSEKNCVQSTFGESSTDCLGSSSCPDNGKSCNDFPEHQNVFIERSSNDSVGSVGEKAIVFSQWTRMLDLLEACLKKSSIQYRRLDGTMSVIARDKAVKDFNTLPEVSVMIMSLKAASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVLRLTVKDTVEDRILALQQKKRKMVASAFGEDGTGGRQSRLTVDDLKYLFMM. 1478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04941 1477 SUPERFAMILY RING/U-box 1157 1209 - -
Seca6g04941 1477 Gene3D - 814 922 IPR038718 -
Seca6g04941 1477 Gene3D - 931 1045 IPR038718 -
Seca6g04941 1477 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 551 1476 - -
Seca6g04941 1477 Pfam Helicase conserved C-terminal domain 1321 1419 IPR001650 -
Seca6g04941 1477 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 816 903 - -
Seca6g04941 1477 SMART helicmild6 1336 1419 IPR001650 -
Seca6g04941 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1052 1476 IPR027417 -
Seca6g04941 1477 Gene3D - 1312 1472 IPR027417 -
Seca6g04941 1477 SMART ultradead3 727 1021 IPR014001 -
Seca6g04941 1477 Gene3D - 706 786 IPR038718 -
Seca6g04941 1477 MobiDBLite consensus disorder prediction 179 196 - -
Seca6g04941 1477 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 717 1044 IPR027417 -
Seca6g04941 1477 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 737 1006 IPR014001 -
Seca6g04941 1477 CDD DEXDc_SHPRH-like 731 1044 - -
Seca6g04941 1477 ProSiteProfiles Zinc finger RING-type profile. 1160 1199 IPR001841 -
Seca6g04941 1477 ProSitePatterns Zinc finger RING-type signature. 1175 1184 IPR017907 -
Seca6g04941 1477 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1313 1472 IPR001650 -
Seca6g04941 1477 Pfam SNF2-related domain 743 1121 IPR000330 GO:0005524|GO:0140658
Seca6g04941 1477 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1153 1211 IPR013083 -
Seca6g04941 1477 MobiDBLite consensus disorder prediction 80 101 - -
Seca6g04941 1477 Pfam Zinc finger, C3HC4 type (RING finger) 1160 1197 IPR018957 GO:0046872
Seca6g04941 1477 MobiDBLite consensus disorder prediction 179 200 - -
Seca6g04941 1477 FunFam SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein 926 1056 - -
Seca6g04941 1477 CDD SF2_C_SNF 1322 1429 - -
Seca6g04941 1477 SMART ring_2 1160 1198 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04941 Seca-Chr6 116822939 116832316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04941 622 1476 RAD5 or RAD16-like Gene Family AT1G61140 60.747 0.0 959
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca6g04941 SNF2_N 1.6e-67 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04941 - - gmx:100805307 1878.6
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g04881 12 133304243 133311450 Seca6g04941 6 116822939 116832316 PCT