LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g04940	ATGACAAGTTTCTACACTTTGATCACTTTGATACTGTTTTTATCCTTGAAGCCTGTTGTTTGTTCTAGAGATAGGCAATGGGGTGGTGGGAGAATATTAAGCTCTGGGGATAATGGTGATCTTGTGAGTAACTTGCCTAGCCAGCCTCCTGCTGATTTCCAGCACTATGCTGGATATGTCACAGTCAATGAGACCAATGGAAGAGCACTCTTTTACTGGTTCTATGAGGCCATGACAAAGCCTGAAGAGAAACCATTGGTGCTGTGGCTTAATGGAGGTCCTGGGTGCTCTTCTGTGGGATATGGAGCAACACAGGAGATTGGTCCATTTTTAGTGGACACCGATGGCAAGGGCCTTAAATTTAATAACTTCTCATGGAACAAAGAAGCCAACATGTTATTCCTGGAATCTCCTGTTGGAGTTGGCTTTTCCTACTCAAATACAACCACTGAATATGCACACCTGGGAGATGACTTCACAGCTAATGATGCTTACACTTTTCTACACAATTGGTTTCTCAAGTTTCCATCATATAGAACAAGGACATTTTACATAACAGGGGAGAGTTACGCAGGAAAGTATGTACCGGAACTGGCTGAACTCATACTTGATAGGAACAAAGACCCTTCCCTTCATATTGATCTCAAGGGCATTTTGCTGGGCAACCCTGAAACTTCTGATGCTGAGGACTGGCAAGGTCTGGTTGATTATGCTTGGAGCCATGCAGTGATATCTGATGAAACTTACAGAACAATCAGGAAAAGTTGTGACTTTAACAGCAGTGATCCATGGAGTGATAAAGATTGTGGTGATGGAGTGGATGAAGTGCTCAAACAGTACAATGAAATTGACATCTACAGCCTCTACACCTCTGTCTGCTTTGCCAGTACAGCGCGTTCTAATGATCAACCAATGCCGATGGTAATGAAGCGCTCATCTAACATGAGGATCATGGGTGGTTATGACCCATGTCTGGATGACTATGCTAAAGCTTTTTATAACAGACCAGATGTTCAGAAGGCCCTCCATGCCAGTGATGGTCACAATTTGAGGAATTGGAGTATTTTGTTAACTAAAAACAGCAATGATATATTCAACCACTGGAAACAATCAAAGCGTTCTGTTATCCCAATTTACAAGAAGCTTATTTCAGCAGGACTTAGGATTTGGCTTTACAGTGGAGACACTGATGGTAGAGTGCCAGTTCTGTCAACAAGATACAGTTTAAGTGTTCTTGGTTTGCCTATCACCAAGCCATGGAGGCCTTGGTACCATGAAAAGGAGGTTAGTGGGTGGTATCAAGAATATGAGGGGCTTACATTTGCGACATTTCGAGGAGCTGGCCATGCAGTGCCCTGTTTTAAACCAAGCAACTCACTGGCATTTTTCTCCTCTTTTCTTCAAGGAGAATCACCACCTTCTACAAGATGA	1431	0.4298	MTSFYTLITLILFLSLKPVVCSRDRQWGGGRILSSGDNGDLVSNLPSQPPADFQHYAGYVTVNETNGRALFYWFYEAMTKPEEKPLVLWLNGGPGCSSVGYGATQEIGPFLVDTDGKGLKFNNFSWNKEANMLFLESPVGVGFSYSNTTTEYAHLGDDFTANDAYTFLHNWFLKFPSYRTRTFYITGESYAGKYVPELAELILDRNKDPSLHIDLKGILLGNPETSDAEDWQGLVDYAWSHAVISDETYRTIRKSCDFNSSDPWSDKDCGDGVDEVLKQYNEIDIYSLYTSVCFASTARSNDQPMPMVMKRSSNMRIMGGYDPCLDDYAKAFYNRPDVQKALHASDGHNLRNWSILLTKNSNDIFNHWKQSKRSVIPIYKKLISAGLRIWLYSGDTDGRVPVLSTRYSLSVLGLPITKPWRPWYHEKEVSGWYQEYEGLTFATFRGAGHAVPCFKPSNSLAFFSSFLQGESPPSTR.	477

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g04940	476	PANTHER	SERINE PROTEASE FAMILY S10 SERINE CARBOXYPEPTIDASE	42	456	IPR001563	GO:0004185\|GO:0006508
	Seca6g04940	476	FunFam	Carboxypeptidase	375	469	-	-
	Seca6g04940	476	Gene3D	-	375	469	-	-
	Seca6g04940	476	Pfam	Serine carboxypeptidase	49	469	IPR001563	GO:0004185\|GO:0006508
	Seca6g04940	476	ProSitePatterns	Serine carboxypeptidases, serine active site.	185	192	IPR018202	GO:0004185
	Seca6g04940	476	Gene3D	-	324	355	-	-
	Seca6g04940	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	135	145	IPR001563	GO:0004185\|GO:0006508
	Seca6g04940	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	122	134	IPR001563	GO:0004185\|GO:0006508
	Seca6g04940	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	171	196	IPR001563	GO:0004185\|GO:0006508
	Seca6g04940	476	PRINTS	Carboxypeptidase C serine protease (S10) family signature	439	452	IPR001563	GO:0004185\|GO:0006508
	Seca6g04940	476	Gene3D	alpha/beta hydrolase	37	295	IPR029058	-
	Seca6g04940	476	SUPERFAMILY	alpha/beta-Hydrolases	40	470	IPR029058	-
	Seca6g04940	476	FunFam	Carboxypeptidase	36	295	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g04940	Seca-Chr6	116808501	116811877	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g04940	329	470	Calmodulin-binding Proteins	AT2G22960	32.168	2.49e-13	66.6

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g04940	K16297		-	gmx:100819700	851.277