Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04937 ATGGATTCATCTTCAGTCTCTGACTGTCAGCACCCGCAGCTCCCACCAGGGTTTCGCTTCCACCCCACAGATGAGGAACTAGTCGTTCACTACCTCAAGAGAAAAGCAGACTCTGCTCCTCTTCCTGTTTCCATCATAGCAGAGATTGATCTCTACAAGTTCGACCCATGGGAACTCCCAAGTATATATGCAATTTCATCACCATCTAAATTTTCTTTTCCTTTAATTATTTCATACATATATATTAATTGTTTAGGTAAGGCAAGTTTTGGTGAGCAAGAGTGGTACTTTTTCAGTCCAAGAGATAGGAAATACCCAAATGGAGCGAGGCCTAACAGGGCAGCTACTTCTGGCTATTGGAAAGCTACTGGAACTGACAAGCCTATACTAGCATCTGATGGGCATCACAAAGTTGGGGTCAAGAAAGCCCTTGTGTTCTATGGTGGGAAGCCTCCAAAAGGGGTTAAAACCAATTGGATTATGCATGAGTATAGACTTGCTGATAATAAGTCCTTGAATTCTACCTCAAAGACACCTTGTAGTAACAAGAAGAACTCTTTGCGGCTTGACGATTGGGTTTTATGCCGAATATACAAGAAAAGCAATAGTAGCACCCAGCCAAGGCTACCTTTGATGGAGCAGGATAAGGAGCTTTCTTCAGAGACAGAGAGTATGCTACCAATGATGTCATCAACTCTGTCAATGGCTAATACGTATCAGAATTCCAAACCCACATGTTCGAGAAGTTTGAGTTATGGACCACTGGGAGATGACAACTTGTTCAATGGAATCATAGCAGTAGCAGCTGATCAGAATATGCAAAATGGTTCTGATTCCTACCATCAAGTCTCCAAGGGAAACTTGCCTATGAAAAGAGCAATACCATCACAGTATTGGAATATGGACACAGCAGGATCTCCATCTCCAGGGTCATCTTCTTCAAGCAGGCAATTCCATTGTGATCTTAATAATGGAAGCAGCAACGCTAACGCTGAGGAAAACAATTCCTTTATTTCTCTGCTTAATCACCTTCCACACACCTCAACTTTTCACCCAAATGCCCTTCTTGGTCATGATGATGATGGTGTCTTGAGGCAACAGTTTCAACTCCCAAGCATAAATTGGAACACATAG 1134 0.425 MDSSSVSDCQHPQLPPGFRFHPTDEELVVHYLKRKADSAPLPVSIIAEIDLYKFDPWELPSIYAISSPSKFSFPLIISYIYINCLGKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILASDGHHKVGVKKALVFYGGKPPKGVKTNWIMHEYRLADNKSLNSTSKTPCSNKKNSLRLDDWVLCRIYKKSNSSTQPRLPLMEQDKELSSETESMLPMMSSTLSMANTYQNSKPTCSRSLSYGPLGDDNLFNGIIAVAADQNMQNGSDSYHQVSKGNLPMKRAIPSQYWNMDTAGSPSPGSSSSSRQFHCDLNNGSSNANAEENNSFISLLNHLPHTSTFHPNALLGHDDDGVLRQQFQLPSINWNT. 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04937 377 Gene3D NAC domain 23 205 IPR036093 GO:0003677|GO:0006355
Seca6g04937 377 FunFam NAC domain-containing protein 72-like 23 205 - -
Seca6g04937 377 ProSiteProfiles NAC domain profile. 14 200 IPR003441 GO:0003677|GO:0006355
Seca6g04937 377 PANTHER NAC TRANSCRIPTION FACTOR 56 14 230 - -
Seca6g04937 377 MobiDBLite consensus disorder prediction 300 326 - -
Seca6g04937 377 Pfam No apical meristem (NAM) protein 15 166 IPR003441 GO:0003677|GO:0006355
Seca6g04937 377 SUPERFAMILY NAC domain 10 200 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04937 Seca-Chr6 116743435 116744722 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04937 11 377 NAC Transcription Factor Family AT1G61110 50.794 9.62e-108 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca6g04937 NAM 7.1e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04937 - - gmx:100792372 475.322