Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04929 ATGTGTTTGAGTTCTAAGCAGGTTTCTAGTAGAGGCCTTGATTGGAACCAGACTTTGCTGCAAGCTCAAAACTTGGAGCTCCCAAAGCCTCCCCCTATGAGGAAACAACAGCAACAAACTCAGCAATCAGAGCCTCTGAAGTGTCCAAGATGTGATTCTTCTAATACCAAGTTTTGTTACTACAACAACTACAACAAGTCTCAACCTCGCCATTTCTGCAGAGCTTGTAAGAGACACTGGACTAAAGGTGGAACTTTGCGCAATGTTCCTGTTGGTGGTGGCAGAAAGAACAAGCGGCTCAAGAAATCAACTACACCACCAACCTCTGCCATCACCACTTCTATTAGTACCTCCACCTCAAATGAGAATATGGATGGTGAGTTGAGTGCCCACATGGCAATTCAAACTCCTCAGCAAAGTGATGATCAGAAAAGCATACCTTCTTCTCTTTATCAATCTCTGATTTGTCCACCATCTTTGCTGCCACCACAACAGAATCTGATGAGTACTAGAGACTCAGAAGGTAAAAACTTTGGTATTGGTAATGGCATCTTCCTTAGTTCAACTATGCCTTTTCCTCAAAACCAAAGCCTTATCTTCCCCTTCTCAACCTCAAACTCCTTTGACACAAACCCAAGTGCAATAGCAGTATCAACCTCTTTGAGATCATCCAATGTCTATAACTATGGTGAAGAGTTTAAAATAATGGAGGATCCAACCATCAACAGTTTAATGCCCAACACTAGCAGCACTAATACACAACCATGGGAGATAGCTGCAACAAGTACTGGCATGGAAATGTCAAACTATTGGAGTTGGGAGGATATTGATTCATTGGTCTCAACTGATGTAAATGCTCCTTGGGATGATCCTGATATCAAACCCTGA 888 0.4245 MCLSSKQVSSRGLDWNQTLLQAQNLELPKPPPMRKQQQQTQQSEPLKCPRCDSSNTKFCYYNNYNKSQPRHFCRACKRHWTKGGTLRNVPVGGGRKNKRLKKSTTPPTSAITTSISTSTSNENMDGELSAHMAIQTPQQSDDQKSIPSSLYQSLICPPSLLPPQQNLMSTRDSEGKNFGIGNGIFLSSTMPFPQNQSLIFPFSTSNSFDTNPSAIAVSTSLRSSNVYNYGEEFKIMEDPTINSLMPNTSSTNTQPWEIAATSTGMEMSNYWSWEDIDSLVSTDVNAPWDDPDIKP. 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04929 295 MobiDBLite consensus disorder prediction 33 48 - -
Seca6g04929 295 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 34 217 IPR045174 GO:0003700|GO:0006355
Seca6g04929 295 MobiDBLite consensus disorder prediction 27 48 - -
Seca6g04929 295 MobiDBLite consensus disorder prediction 103 123 - -
Seca6g04929 295 ProSiteProfiles Zinc finger Dof-type profile. 46 100 IPR003851 GO:0003677|GO:0006355
Seca6g04929 295 MobiDBLite consensus disorder prediction 87 123 - -
Seca6g04929 295 ProSitePatterns Zinc finger Dof-type signature. 48 84 IPR003851 GO:0003677|GO:0006355
Seca6g04929 295 Pfam Dof domain, zinc finger 45 98 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04929 Seca-Chr6 116645089 116646003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04929 20 102 C2C2-Dof Transcription Factor Family AT1G28310 65.476 2.53e-30 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Seca6g04929 zf-Dof 1.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04929 - - gmx:778119 431.795