Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04924 ATGAGCTGTGGCTGCTTTGGAGCCTCATCCATAAAGAAGGAAAGACGTCCTTCTCATATTTCCAATGAAATTGATGGCTATCCTCTAGATAATGTTAGCCATTTTTCTGATAAAGAACTGAGATTGGCAACTGATAATTATCATGCAAGCAACAAGATAGGACGGGGAGGTTTTGGAACTGTTTACCAGGGAACCTTTAGAGATGGAAGACGGGTAGCAGTGAAGACCCTTTCAGTTGGATCAAAGCAGGGAGTTCGTGAATTTTTGACTGAAATTAAAACTTTGTCAAATATTAAACATCCAAACCTTGTTGAATTGATTGGATACTGCATTCAAGGACCTAATCGTGCATTAGTCTACGAGCATGTAGAAAATGGCAGCCTTCATAGTGCATTACTTGGCTCAAAGAGTATAAACATCAAATTAGACTGGAAAAAGAGATCTGCTATTTGCATCGGTACTGCAAAGGGTCTTGCATATCTTCATGAAGGACTAGTGCCACATATTGTGCACAGAGACATCAAAGCTAGTAATGTACTACTTGACAGAGACTTTAATCCGAAAATAGGAGATTTTGGGATGGCTAAATTATTTCCAGATGACATCACTCACATTAGTACAAGAATTGCCGGAACAACGTATGTATTCTTAGTTTTTTTTTTTTTAAGTTTTTGCTTTCGCCATAGTTTTTTATGCAGTGGTTACTTAGCACCGGAATATGCATTGGGTGGCCAGTTAACCAAGAAGGCTGATGTATACAGCTTTGGGGTTCTTATACTTGAAATAATTAGTGGCAAAAGCAGCGCCAGGACAAGCTGGGGAGGGTCACATAAATTCCTCTTGGAATGGGCGTGGCAACTTCATGAAGAGGGGAAATTGTTGGAGCTTGTAGATCCAGACATGAAAGAATTTCCTGAGAAAGAGGTAATTAAGTACATGAAGGTTGCTCTTTTCTGCACACAGTCAGCTGCAAGCAGAAGGCCATTGATGACTCAGGTGGTTGATATGCTCTCCAAGGAAATCCAGCTCAATGAGAAGCAACTTACTGCGCCAGGATTCTTCATTGATGCAGGAGAATCCTCTCAAAAGAAGTCACAGTCTGACTTCTCAAGCTTTACTCATGTTAGTATTACTCAGGTCACCGCGCGGTGA 1152 0.408 MSCGCFGASSIKKERRPSHISNEIDGYPLDNVSHFSDKELRLATDNYHASNKIGRGGFGTVYQGTFRDGRRVAVKTLSVGSKQGVREFLTEIKTLSNIKHPNLVELIGYCIQGPNRALVYEHVENGSLHSALLGSKSINIKLDWKKRSAICIGTAKGLAYLHEGLVPHIVHRDIKASNVLLDRDFNPKIGDFGMAKLFPDDITHISTRIAGTTYVFLVFFFLSFCFRHSFLCSGYLAPEYALGGQLTKKADVYSFGVLILEIISGKSSARTSWGGSHKFLLEWAWQLHEEGKLLELVDPDMKEFPEKEVIKYMKVALFCTQSAASRRPLMTQVVDMLSKEIQLNEKQLTAPGFFIDAGESSQKKSQSDFSSFTHVSITQVTAR. 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04924 383 FunFam Os07g0541700 protein 123 212 - -
Seca6g04924 383 CDD STKc_IRAK 53 339 - -
Seca6g04924 383 FunFam cold-responsive protein kinase 1 18 122 - -
Seca6g04924 383 ProSitePatterns Serine/Threonine protein kinases active-site signature. 169 181 IPR008271 GO:0004672|GO:0006468
Seca6g04924 383 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 31 368 - -
Seca6g04924 383 Pfam Protein kinase domain 47 272 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04924 383 Gene3D Phosphorylase Kinase; domain 1 19 122 - -
Seca6g04924 383 SUPERFAMILY Protein kinase-like (PK-like) 23 337 IPR011009 -
Seca6g04924 383 SMART serkin_6 47 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04924 383 ProSitePatterns Protein kinases ATP-binding region signature. 53 75 IPR017441 GO:0005524
Seca6g04924 383 Gene3D Transferase(Phosphotransferase) domain 1 123 352 - -
Seca6g04924 383 ProSiteProfiles Protein kinase domain profile. 47 343 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04924 383 PIRSF ILK 9 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04924 Seca-Chr6 116602686 116607099 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04924 11 372 Receptor kinase-like Gene Family AT1G56120 45.304 3.46e-101 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g04924 Pkinase 2.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04924 - - mtr:11430773 584.334