LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g04891	ATGATCAAACACAAGCACTCTCCCCCACTTCTTCTTTCCATTTTCCTTCTCTTCAATTCAATATCCGCCATTGATTTCGTCTTCAATGGCTTCAACTCTTCTGATATCTTGCTCTTTGGCAATGCCTCCGTTGATTCTCGAATTCTAACCCTCACCCATCACCAAGTTTTCTCAATTGGCCGTGCTCTGTACCCTCAGAAGATCCCCACCAAAAAGCCTAATTCTTCATACGTGTACCCTTTCTCCACTTCTTTCATCTTCGCTATGGCACCTTTTGAAGATACCCTTCCCGGGCATGGCTTGGTTTTCATCTTCACACCTGTCACAGGCATCCAAGGTACAACTTCTGCTCAAAATCTGGGTCTGTTTAATCTTACCAACAATGGAAATGCTAGTAACCACGTGTTTGGGGTTGAGTTCGATGTCTTCATGAACCAAGAGTTCGACGACATAAACGACAACCATGTTGGGATCGACATAAACTCTCTCAAGTCTCTTGTCTCGCATGATGCCGGGTATTGGCCAGATGAAAGGAAAAGCAAATTGATACTTAACAATGGTGAAAATTACCAAGTTTGGATTGATTATGAAGATTCTTTGTTTAATGTTACCATGGCACCGGTGGGTATGAAAAGGCCTAGCAGGCCATTGTTGAATGTTTCTCTCAATTTATCTGAAGTTTTTGTGGATGAAATGTTTGTGGGGTTTACTAGTGCCACAGGGCAACTAGTTCAAAGTCACAAGATTCTGGCTTGGAGTTTTAGCAATACAAATTTTTCATTAAGTGAAGCACTCATCACTACTGGGTTACCGTCTTTTGTGCTTCCAGAACCTTCAGTTTTAAAGTCCAAGGGGTTTATTGCAGGATTTACAATAGGAGTTTTCTTTATTATTTGTCTCTTCGTTTTGTTGGCACTGTTTCTAATTCAGGGGAAGCGAAGGAAGGCAAGGAAGAGACAGGAAATGGAAGATTGGGAATTAGAGTATTGGCCACACAGAATGACATATGAAGAAATAGAGGCATCCACAAAGGGGTTCTCTGAGGAAAACGTGATTGGTGTTGGTGGGAATGGGAAGGTCTACAAGGGTGTTTTACCAGGAGGGGCAGAGATTGCTGTGAAGCGAATTTCTCATGAAAATGATGGTATGCGAGAATTTCTTGCAGAAATTTCAAGTCTTGGAAGATTGAAGCAAAGGAATTTGGTTGGGTTGAGAGGCTGGTGTAAAAAAGATGTGGGGAATTTCTTGTTAATTTATGACTATATGGAAAATGGAAGCTTAGACAAAAGGGTGTTTGATTGTGATGAGAGCAAGATGTTAGGTTATGAAGACAGAATGAGGGTTATTAAAGATGTGGCTTCTGCAGTCTTGTACTTGCATGAAGGGTGGGAAGCCAAGGTAGTGCATAGGGACATTAAGGCTAGCAATGTGTTGTTGGATAAGGATATGAATGGAAGGCTTGGAGATTTTGGGTTAGCCAGAATGCACAGCCATGGTCAAGTTTCTAGCACCACAAAATTGGTTGGAACAGTTGGGTACATGGCTCCTGAAGTGATTAGGACTGGGCGAGCTTCAACTCAGACAGATGTTTACATGTTTGGCATCTTGATTTTAGAGGTCATGTGTGGAAGGAGACCACTAGAAGAAGGTAAGCCACCTTTGGTTGAGTGGGTTTGGCAACTAATGGTGCAAGGGCAACTTGTGAATGCACTTGATGAAAGGTTAAGGGCTAAAGAAGAGCTCAGTGTGCAGGAAGTGGAGAGGGTACTAGAGTTGGGTTTGTTATGTGCATACCCTGAACCAAAAGCAAGGCCAACAATGAGACAAGTGGTGAATATTTTGGAGGGGAAGAACGAGGGAGAGGATTCAGAAATTGAGAATATGGATACTTATTTGCTCCAACAGTTAAAATCAAGGGACATATTGTCTGAGTATTCCCAGTATTTTAGCTATGTTTCACACCCAACTTTTCAAGATATTCGTAACTCTTCCTCAATGTCTCTCACTTTGTCCGGATCTGTAGTTGAGGGAAGGTGA	2037	0.4212	MIKHKHSPPLLLSIFLLFNSISAIDFVFNGFNSSDILLFGNASVDSRILTLTHHQVFSIGRALYPQKIPTKKPNSSYVYPFSTSFIFAMAPFEDTLPGHGLVFIFTPVTGIQGTTSAQNLGLFNLTNNGNASNHVFGVEFDVFMNQEFDDINDNHVGIDINSLKSLVSHDAGYWPDERKSKLILNNGENYQVWIDYEDSLFNVTMAPVGMKRPSRPLLNVSLNLSEVFVDEMFVGFTSATGQLVQSHKILAWSFSNTNFSLSEALITTGLPSFVLPEPSVLKSKGFIAGFTIGVFFIICLFVLLALFLIQGKRRKARKRQEMEDWELEYWPHRMTYEEIEASTKGFSEENVIGVGGNGKVYKGVLPGGAEIAVKRISHENDGMREFLAEISSLGRLKQRNLVGLRGWCKKDVGNFLLIYDYMENGSLDKRVFDCDESKMLGYEDRMRVIKDVASAVLYLHEGWEAKVVHRDIKASNVLLDKDMNGRLGDFGLARMHSHGQVSSTTKLVGTVGYMAPEVIRTGRASTQTDVYMFGILILEVMCGRRPLEEGKPPLVEWVWQLMVQGQLVNALDERLRAKEELSVQEVERVLELGLLCAYPEPKARPTMRQVVNILEGKNEGEDSEIENMDTYLLQQLKSRDILSEYSQYFSYVSHPTFQDIRNSSSMSLTLSGSVVEGR.	679

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g04891	678	SUPERFAMILY	Concanavalin A-like lectins/glucanases	22	259	IPR013320	-
	Seca6g04891	678	Pfam	Legume lectin domain	24	258	IPR001220	GO:0030246
	Seca6g04891	678	Pfam	Protein kinase domain	347	612	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g04891	678	FunFam	L-type lectin-domain containing receptor kinase S.4	22	262	-	-
	Seca6g04891	678	ProSitePatterns	Protein kinases ATP-binding region signature.	352	374	IPR017441	GO:0005524
	Seca6g04891	678	Gene3D	Phosphorylase Kinase; domain 1	308	421	-	-
	Seca6g04891	678	FunFam	L-type lectin-domain containing receptor kinase S.4	422	627	-	-
	Seca6g04891	678	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	467	479	IPR008271	GO:0004672\|GO:0006468
	Seca6g04891	678	SMART	serkin_6	346	613	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g04891	678	FunFam	Putative L-type lectin-domain containing receptor kinase VII.2	308	421	-	-
	Seca6g04891	678	Gene3D	-	22	264	-	-
	Seca6g04891	678	CDD	lectin_legume_LecRK_Arcelin_ConA	24	257	IPR001220	GO:0030246
	Seca6g04891	678	Gene3D	Transferase(Phosphotransferase) domain 1	422	639	-	-
	Seca6g04891	678	CDD	STKc_IRAK	352	616	-	-
	Seca6g04891	678	SUPERFAMILY	Protein kinase-like (PK-like)	323	615	IPR011009	-
	Seca6g04891	678	ProSiteProfiles	Protein kinase domain profile.	346	632	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g04891	678	PANTHER	-	42	618	-	-
	Seca6g04891	678	Coils	Coil	308	328	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g04891	Seca-Chr6	116321401	116323458	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g04891	19	562	Receptor kinase-like Gene Family	AT4G04960	66.243	0.0	726

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_L-LEC	Seca6g04891		Pkinase	4.6e-44	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g04891	-		-	gmx:100804391	1163.67