Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04888 ATGGAGGAAGATACTAATTCATGGATAAGGAGGACAAAGTTCTCACACACAGTGTGCCATCGTTTGGATCCATCTAGATTGAGTTCTATTCCAATCAGCATTCAGTCAGAGCAGAATTCAAGGCCTCCTTCAAAGCCTCAGAGAAACCCCATGAGAAACAAGCAGAGGTCTTTGTCACCATTGCCTGAAACTTCTCTTTCTGAGGCCTTCAGAGAAGCAAGACATGAACAGAAGAGGTTCTCAACACCTGGTCCTAGTAGGGAGAAGAGAATTATGGGCAAGTTATTGAACAAGGATTCTCGGGAAACTAAGCCATCAAGTTCAAAATCTCCTCCTCGTGGTCTAAATGGGCAAATGAAGTCCAAGCACCGCAAGGATTCAACATGGACTAAGTATTTGGAAAATGGTGGTGGAGGAAAGGTTACTGCTGTGGAAACAGCTGAAGAATGGACTGTTGACATGTCTAAGCTGTTTCTTGGCCTTAAGTTTGCTCATGGGGCTCATAGTCGACTTTACCATGGTGAATATAAAGGTGAACCTGTTGCTGTTAAAATCATTAGGGTACCTGATGATGATGAAAATGGAAACTTGGCTTCTCGATTAGAGAAACAGTTCATTAGAGAAGTCACCCTTTTATCTCGCCTCCACCATCCAAATGTTATAAAGTTCGTAGCAGCATGCAGAAAGCCACCGGTTTATTGTATTATCACAGAATATCTATCAGAAGGTTCCTTGAGGGCATATTTGCATAAGTTGGAGCACAAAACTATTTCTCTACAAAAGCTAATAGCTTTTGCTCTGGATATTGCTCGTGGGATGGAATATATACACTCTCAAGGTGTCATTCATCGAGATCTTAAACCAGAGAATGTTCTTATTAATGAAGACTCTCACCTTAAAATTGCTGATTTTGGCATTGCTTGTGAGGAGGCATACTGTGACTTATTGGCTGATGACCCTGGCACCTACCGGTGGATGGCACCTGAGATGATCAAACGTAAATCCTATGGGAGAAAGGTTGATGTCTATAGTTTTGGGCTTATCTTATGGGAAATGTTGACTGGAACAATACCATATGAAGATATGAACCCAATCCAGGCTGCTTTTGCAGTAGTAAATAAGAATTCAAGGCCAGTTATTCCTTCAGACTGCCCTCCTGCTATGCGAGCTTTAATTGAGCAGTGTTGGTCCTTGCAACCAGATAAAAGGCCTGATTTCTGGCAGGTTGTTAAGGTATTAGAGCAATTTGAATCTTCACTTGCCCGTGATGGAACGCTGACTCTGGTGCAAAACTCTCTTTGCCAAGATCATAAGAAAGGGCTTCTTCATTGGATTCAAAAGCTTGGTCCTGTGCATCAAAATAGTGGCCCTGTGCCTAAACCCAAATTCACATGA 1395 0.4222 MEEDTNSWIRRTKFSHTVCHRLDPSRLSSIPISIQSEQNSRPPSKPQRNPMRNKQRSLSPLPETSLSEAFREARHEQKRFSTPGPSREKRIMGKLLNKDSRETKPSSSKSPPRGLNGQMKSKHRKDSTWTKYLENGGGGKVTAVETAEEWTVDMSKLFLGLKFAHGAHSRLYHGEYKGEPVAVKIIRVPDDDENGNLASRLEKQFIREVTLLSRLHHPNVIKFVAACRKPPVYCIITEYLSEGSLRAYLHKLEHKTISLQKLIAFALDIARGMEYIHSQGVIHRDLKPENVLINEDSHLKIADFGIACEEAYCDLLADDPGTYRWMAPEMIKRKSYGRKVDVYSFGLILWEMLTGTIPYEDMNPIQAAFAVVNKNSRPVIPSDCPPAMRALIEQCWSLQPDKRPDFWQVVKVLEQFESSLARDGTLTLVQNSLCQDHKKGLLHWIQKLGPVHQNSGPVPKPKFT. 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04888 464 MobiDBLite consensus disorder prediction 29 64 - -
Seca6g04888 464 SMART serkin_6 157 416 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04888 464 PRINTS Tyrosine kinase catalytic domain signature 340 362 IPR001245 GO:0004672|GO:0006468
Seca6g04888 464 PRINTS Tyrosine kinase catalytic domain signature 275 293 IPR001245 GO:0004672|GO:0006468
Seca6g04888 464 PRINTS Tyrosine kinase catalytic domain signature 321 331 IPR001245 GO:0004672|GO:0006468
Seca6g04888 464 PRINTS Tyrosine kinase catalytic domain signature 237 250 IPR001245 GO:0004672|GO:0006468
Seca6g04888 464 PRINTS Tyrosine kinase catalytic domain signature 384 406 IPR001245 GO:0004672|GO:0006468
Seca6g04888 464 Gene3D Phosphorylase Kinase; domain 1 145 241 - -
Seca6g04888 464 ProSiteProfiles Protein kinase domain profile. 157 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04888 464 CDD STKc_MAP3K-like 164 413 - -
Seca6g04888 464 MobiDBLite consensus disorder prediction 68 106 - -
Seca6g04888 464 Pfam Protein tyrosine and serine/threonine kinase 162 413 IPR001245 GO:0004672|GO:0006468
Seca6g04888 464 MobiDBLite consensus disorder prediction 29 133 - -
Seca6g04888 464 FunFam serine/threonine-protein kinase HT1 242 435 - -
Seca6g04888 464 ProSitePatterns Serine/Threonine protein kinases active-site signature. 281 293 IPR008271 GO:0004672|GO:0006468
Seca6g04888 464 FunFam Serine/threonine-protein kinase isoform 1 147 241 - -
Seca6g04888 464 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 85 420 - -
Seca6g04888 464 Gene3D Transferase(Phosphotransferase) domain 1 242 443 - -
Seca6g04888 464 SUPERFAMILY Protein kinase-like (PK-like) 141 413 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04888 Seca-Chr6 116294915 116298625 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04888 1 464 MAP Kinase Kinase Kinase AT5G58950 56.654 0.0 592
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Seca6g04888 PK_Tyr_Ser-Thr 3.2e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04888 - - gmx:547826 818.15