Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04887 ATGGAGGAAAACCCTGCAGCAGGTTCATCCAGAATTGATAGAAAATTCATAGAGAGGAATAGAAGAAATCAAATGAAAGCTCTCTACCGCAAGCTCACCTCACTTGTGCCTCATCAAACCTCAAAGGAGGGCATTTCACTCCCGGATCAGCTAGAGGAAGCCACAAACTACATAAAGAAATTACAGATGAACCTGGAGAAATTAAAAGAGAAGAAAAACACCCTACTAGGAATTGAAGGAGGGCCAAATGTGAATATGAATATGAATAGAGGCAACAAGACCTTGGGGTTAAAATCTCCAAAATTTGAAATCCAACAAATGGGTTCAGTCTTGCAGGTTGTCCTAATAACTGGCTTGGATTCTCAGTTCATGTTCAATGAAACCATTCGTGTTCTTCATGAAGAAGGAGTGGATATTGTTAATGCCAGTTATAAAGTCATTCAAGATGCTGTTTTCCATTCAATACACTGTCAGGTCGTAGGGGAGTTTGCCAATGGAACTACTGCAACTGAAAGGATATATCAGAGGCTAAAGAAGTTTATGTATAATGATGCTGCCTATAATAACAATAATAATAATAATAATGCCTTTTACAATGTAATATGA 606 0.3779 MEENPAAGSSRIDRKFIERNRRNQMKALYRKLTSLVPHQTSKEGISLPDQLEEATNYIKKLQMNLEKLKEKKNTLLGIEGGPNVNMNMNRGNKTLGLKSPKFEIQQMGSVLQVVLITGLDSQFMFNETIRVLHEEGVDIVNASYKVIQDAVFHSIHCQVVGEFANGTTATERIYQRLKKFMYNDAAYNNNNNNNNAFYNVI. 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04887 201 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 11 180 - -
Seca6g04887 201 Pfam Helix-loop-helix DNA-binding domain 14 62 IPR011598 GO:0046983
Seca6g04887 201 Gene3D - 3 79 IPR036638 GO:0046983
Seca6g04887 201 FunFam Transcription factor bHLH162 1 87 - -
Seca6g04887 201 Coils Coil 51 78 - -
Seca6g04887 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 61 IPR011598 GO:0046983
Seca6g04887 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 9 75 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04887 Seca-Chr6 116268481 116269835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04887 7 181 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 45.604 7.09e-48 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca6g04887 HLH 5.3e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04887 - - gmx:100784418 235.343