Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04886 ATGGTTAGAGCTTTCGAAGTCGGAGCCGTTCCTTTCAATCCCGATGGTTGGGGTCCATTGGACTCCACCGCCGGCGGAACCACCACCAACAATCTGCCACTCAATGTCCCCTTCGCTCCCTTCTCCCGCTCCGACAAGCTCGGTCGGATCGCCGATTGGACTCGCAACTTCAACAACCCGACCCGCCCCAAGAACCCTGCCGACTCCGCATTCGACTTCACCAACGACGACTCCTTCCCTGCCTCCGCCGATGACGACTCCTCCTTCCGCCTCGTTGACGGCAAGCCCCCTCCGCGGCCCAAATTCGGTCCCAAATGGCGCTTCCAGCAGCAACGCCAGCTTCCCCAGCGCCGTGACGAGGAGGTTGAGGCCCGTAAGCGCGAGGCGGAGAAGGAGAGAGCCCGCCGCGATCGTCTCTACCACCTTAACCGTTCAAACCCTAACGCTCCACGCCGCGAAGCCGCAGTTTTCAAATCCTCTGTGGATATCCAACCCGAGTGGAACATGCACGATCAGATCCCCTTCGCTACCTTCTCCAAGCTCTCCTTCAACGTCCCCGAACCCGAAGATCTTCTGCTCTGCGGTGCTCTCGAGTACTACGATCGCTCCTATGATCGAATCACACCTAAGAACGAGCGCCGCCTCGAGAGGTTCAAGAATCGCAACTTCTTCAAGGTTACCACCACTGATGACCCCGTCATTAGGAGACTCGCCAATGAAGACAAAGCTACCGTTTTTGCTACTGACACTATTCTCTCCACTCTCATGTGCGCCCCCAGGTCTGTTTACTCGTGGGATATTGTTGTCCAGCGTGTTGGGAACAAGCTTTTCTTCGATAAGAGAGATGGGTCACAGTTGGATTTGCTCTCTGTTCACGAGACCTCGCAGGAGCCCTTGCCTGAGGCTAAGGATGATATTAACTCTGCTCATTCCTTGAGCGTTGAGGCGGCTTATATCAATCAGAATTTCTCCCAGCAAGTGTTGATCAGGGATGGGAACAAGGTCACTTTTGATGAGCCTAACCCTTTTGCTAATGAGGGTGAGGAAGTTGCTTCTGTAGCTTATAGGTATAGGAGGTGGAAGCTGGATGATGATATGTATCTCGTTGCGAGATGTGAGGTGCACAGTGTTGTTGATGTGAACAAGCAAAGGTCGTTCCTCACTTTGAATGCTTTGAATGAGTTTGACCCCAAGTATTCTGGTGTTGACTGGAGGCAGAAGTTGGAGACACAGAGGGGTGCTGTGTTGGCCACTGAGCTCAAGAATAATGCAAATAAATTGGCTAAATGGACTGCCCAAGCTCTGTTGGCAAGTGCGGATATGATGAAGCTGGGATATGTTTCTCGTATTCATCCCCGTGACCATTTTAATCATGTGATTTTGGCTGTGGTTGGATACAAACCCAGGGACTTTGCGGCACAAATTAATTTGAACACTACCAATATGTGGGGAATAGTGAAGTCTATTGTGGACTTGTGCATGAAATTGAATGAGGGGAAATATGTTCTTGTGAAGGATCCAGCCAAGCCCCAGGTTAGGATTTATGAGGTTCCAGCAGATGCATTTGAAAACGACTATGTGGAGGAGCCACTTCCTGAGGAGGAGCAAGTTCAACCTCCAGCAGAGGGTGCTGATGGTGGAGAGGCAGCTGCTACTACGAATGACGTGGAAGATAAGCAGATAGATGAGCAAGCTTAA 1698 0.5147 MVRAFEVGAVPFNPDGWGPLDSTAGGTTTNNLPLNVPFAPFSRSDKLGRIADWTRNFNNPTRPKNPADSAFDFTNDDSFPASADDDSSFRLVDGKPPPRPKFGPKWRFQQQRQLPQRRDEEVEARKREAEKERARRDRLYHLNRSNPNAPRREAAVFKSSVDIQPEWNMHDQIPFATFSKLSFNVPEPEDLLLCGALEYYDRSYDRITPKNERRLERFKNRNFFKVTTTDDPVIRRLANEDKATVFATDTILSTLMCAPRSVYSWDIVVQRVGNKLFFDKRDGSQLDLLSVHETSQEPLPEAKDDINSAHSLSVEAAYINQNFSQQVLIRDGNKVTFDEPNPFANEGEEVASVAYRYRRWKLDDDMYLVARCEVHSVVDVNKQRSFLTLNALNEFDPKYSGVDWRQKLETQRGAVLATELKNNANKLAKWTAQALLASADMMKLGYVSRIHPRDHFNHVILAVVGYKPRDFAAQINLNTTNMWGIVKSIVDLCMKLNEGKYVLVKDPAKPQVRIYEVPADAFENDYVEEPLPEEEQVQPPAEGADGGEAAATTNDVEDKQIDEQA. 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04886 565 Coils Coil 117 137 - -
Seca6g04886 565 MobiDBLite consensus disorder prediction 112 135 - -
Seca6g04886 565 MobiDBLite consensus disorder prediction 57 135 - -
Seca6g04886 565 MobiDBLite consensus disorder prediction 525 565 - -
Seca6g04886 565 PIRSF Transl_init_eIF3d 1 546 IPR007783 GO:0003743|GO:0005737|GO:0005852
Seca6g04886 565 Hamap Eukaryotic translation initiation factor 3 subunit D [EIF3D]. 3 528 IPR007783 GO:0003743|GO:0005737|GO:0005852
Seca6g04886 565 Pfam Eukaryotic translation initiation factor 3 subunit 7 (eIF-3) 6 516 IPR007783 GO:0003743|GO:0005737|GO:0005852
Seca6g04886 565 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT 7 4 539 IPR007783 GO:0003743|GO:0005737|GO:0005852
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04886 Seca-Chr6 116260439 116264308 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04886 1 563 Eukaryotic Initiation Factors Gene Family AT4G20980 76.491 0.0 909
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04886 K03251 - gmx:100799613 1016.53