Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04875 ATGGAGGAAAGGTGGGAGAGTGAGGGGAAGATGAGCATGAAGTACAAGGAGGAGGAAGAGTATGAAGATGATGAAGAGGAGGAAGAGGAAGAGGTGAGTGGTTATGGAGGAGAGGATGGGAGGAAGAAGAGAGTGGTGAGTGATGTGTACAACAACAACAACAAGAGATCAGGGTCCAAAGCTGGAGGGTCAGTGCCACCTTCTTGTCAGGTGGATAGTTGTAATACTGATCTAACTCATGCTAAGCAGTACCATCGCCGCCATAAGGTCTGTGAGCTTCATGCTAAGGCTCCTTCCGTACTCATTGCAGACCAACACCAAAGGTTTTGCCAGCAATGTAGCAGGTTTCATGAGCTATCAGAATTTGATGACTCAAAAAGGAGTTGTAGAAGGCGTTTGGCTGGACATAATGAGAGGCGTCGCAAAAATGCATCTGAATTTCATGGATGA 450 0.4667 MEERWESEGKMSMKYKEEEEYEDDEEEEEEEVSGYGGEDGRKKRVVSDVYNNNNKRSGSKAGGSVPPSCQVDSCNTDLTHAKQYHRRHKVCELHAKAPSVLIADQHQRFCQQCSRFHELSEFDDSKRSCRRRLAGHNERRRKNASEFHG. 150
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04875 149 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 31 144 IPR044817 GO:0003677
Seca6g04875 149 PIRSF SBP 5 149 IPR017238 GO:0003677|GO:0003700|GO:0009908
Seca6g04875 149 Gene3D - 59 130 IPR036893 GO:0003677|GO:0005634
Seca6g04875 149 MobiDBLite consensus disorder prediction 1 17 - -
Seca6g04875 149 ProSiteProfiles Zinc finger SBP-type profile. 66 143 IPR004333 GO:0003677
Seca6g04875 149 MobiDBLite consensus disorder prediction 18 34 - -
Seca6g04875 149 SUPERFAMILY SBT domain 67 146 IPR036893 GO:0003677|GO:0005634
Seca6g04875 149 Coils Coil 11 31 - -
Seca6g04875 149 MobiDBLite consensus disorder prediction 35 49 - -
Seca6g04875 149 MobiDBLite consensus disorder prediction 1 70 - -
Seca6g04875 149 Pfam SBP domain 69 142 IPR004333 GO:0003677
Seca6g04875 149 FunFam Squamosa promoter-binding-like protein 14 60 130 - -
Seca6g04875 149 MobiDBLite consensus disorder prediction 50 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04875 Seca-Chr6 116142306 116144134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04875 69 146 SBP-box Gene Family AT2G33810 73.077 4.44e-40 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Seca6g04875 SBP 1.3e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04875 - - gmx:100782285 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04875 6 116142306 116144134 Seca6g04875 6 116142306 116144134 ECH
Seca4g09551 4 225366691 225367989 Seca6g04875 6 116142306 116144134 ECH