Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04867 ATGGAATCTGAGGAGCAGGAGGAGAACTTGGGGCCAGTTTCTTCTGTGGCAGAAAACCCTGAAGTAATGCCACCATCTAGTGTGCATTGCATGGCAGAGAATGATGCCATGCTTAAAGCACCTGTTCCTTCATATTCAAGCCAACATATGGAATCTGAGGGGCAGGAGAAGAACTTGGGGCCAGTTTCTTCTGTGGCAGAAAACCCTGAAGTAATGCCACCATCTAGTGTGCATTGCATGGCAGAGAATGATGCCGTGCTTAAAGCACCCGTTCCTTCATGTGAGACACTAACATTGAAAAAGGAAGTGTTTCACCCGAAACATGAAATTTCAAGTCATTCAAATTCAAGAGAAAACCTGATTACGGCTGAAGATGGCAAAAGTCAAGGATTAGATGTTGACATTGAAAATGCTGGATCTCCTTTACGGATAAAAACCTTTGGAGGATGCAGTGAACCGGGTTGCAATAACAAAGCTTATTCATCAGGTGTTAAGGACGGTGATGCTAGGGCCACGAAGTCATCTAGTGATACTGGAAAAGATGTGGTTAGTGGCCTCCTACCAAGAGATTGCTTTGCTGAGGATGCTGATGGTGGTCAGAATTCTAAGAACAAAATTTTGCAGTCGGAAATGGAGTCAAGGGTTGATGTGAAACAAATGACATCAAGGACTAGAAATCTGTCTCCCAGTGCTGAGACTAAAGATGGAAACAAACGGCCTACAATTATATGTGATTTTTTTGCTAAAGGATGGTGCATCAGAGGTAGTTCTTGTAGCTTTCTTCATATAAAAGACACTGTGAGTAATACTGACCAGGAGGAGGCTGAAGGAGACGTAGTTGCTGCACATCAGAAGAGAGAATTGAAATTGGAAGAAGGTGTTAAGGAAAATGTTGAGAGAGCAAGGATGAATGAGGAAGAAGCAAGCCCAAGTTGGCATCCATCTCATGAAAAGCAGAAGCTTCCGTCAAGGGACAACTTGTTTCCAGAGAATAGATATGCATTTAATGCATCAAACAATTATTTCAGCCCAAATCTTTCCTCATATTCATCCCATGCAGAGGGAATGGCTACCATTCGAAGCCAGCCTATGTATAAAGGGTATACTTCCACAGGTTTGAGCCATTCACCTATTTCAAGCTTGGGTACTCAGTTTCCAGCTACAAGCATGTCACTCTCCCATCGGATTTTAGCCCAACCAGGATGTTCATTGCCTTTTAATTCATCATTAGGTGCAAGTACTTTGGATTCTCAAAAGTTTTTGAACAGTGAGAAAGAATATCATACCTCCACTTTCTCTAGTTCAGAGCGGGAAGATTTTCCTCTAGTTGGTTCATCTAGGGTTCCACCACATTCCCTTGGATATAAATCAAAAATTCATTCTTATGATTGGGAACCTTCTGTGCCATTTCGACCATCCTTTTTTATTACTTCTATGAATGTATCATCCCCTGGAGATCTTTATGACCCTCTTCGTGATAGCATTGAGATACCTAATATAGGAGATGGGTCTTTGAAAGCTTCCCTTTTAATTCAAGGATCATCTATCCAGGGTTCATCACAGGTTCGGCCATATGGTGATTCGGCTGCAGTTGGAAAACGCATGTCAGATCTTAATGAGGACAAAAGTTCTGTATCTTCTCATAATAGAATTTACAAAAATGAGCCAAACAGAAGTTGTGATCCTCATGAAAAAGATTGTCTTGCAACTGAAACGGAGATAACATCAGGAACTGGTGTAAACTACCAAAATGGTAAAATAAGTGCAGGACAACATACCTTTGGTGTTGAAGATATTACAAAAGCAGAGAAAGAATGGACTGAGCATGATGCTAGACATCATGGTGAGGGATCAGAGCACAAAAGGAGGAGAGTGGAAAAGGATAAGAAAATTCATGAAATGGATGTTGACTTTCAGACAGATGACAGTATGCAGAAGGAAATGAAGGCACTAAAATATTTTCGTGCGGCTCTTGTTGATCTAGTGAAAGAGTTGTTAAAACCATCTTGGCACGAGGGTCGTCTCAGCAAGGATGCACATATTATGATAGTTAAAAAATCAGTTGACAAGGTTGTTAGCACCTTAGAGCCCCACCAGATTCCAACCACTGTAGATACTGCTAAGCAATATGTTTCTTCGTGTCGAGCGAAAATTGCAAAGCTGGTCAATGGATATGTCAATAAATATGGCAAATCTTGA 2199 0.412 MESEEQEENLGPVSSVAENPEVMPPSSVHCMAENDAMLKAPVPSYSSQHMESEGQEKNLGPVSSVAENPEVMPPSSVHCMAENDAVLKAPVPSCETLTLKKEVFHPKHEISSHSNSRENLITAEDGKSQGLDVDIENAGSPLRIKTFGGCSEPGCNNKAYSSGVKDGDARATKSSSDTGKDVVSGLLPRDCFAEDADGGQNSKNKILQSEMESRVDVKQMTSRTRNLSPSAETKDGNKRPTIICDFFAKGWCIRGSSCSFLHIKDTVSNTDQEEAEGDVVAAHQKRELKLEEGVKENVERARMNEEEASPSWHPSHEKQKLPSRDNLFPENRYAFNASNNYFSPNLSSYSSHAEGMATIRSQPMYKGYTSTGLSHSPISSLGTQFPATSMSLSHRILAQPGCSLPFNSSLGASTLDSQKFLNSEKEYHTSTFSSSEREDFPLVGSSRVPPHSLGYKSKIHSYDWEPSVPFRPSFFITSMNVSSPGDLYDPLRDSIEIPNIGDGSLKASLLIQGSSIQGSSQVRPYGDSAAVGKRMSDLNEDKSSVSSHNRIYKNEPNRSCDPHEKDCLATETEITSGTGVNYQNGKISAGQHTFGVEDITKAEKEWTEHDARHHGEGSEHKRRRVEKDKKIHEMDVDFQTDDSMQKEMKALKYFRAALVDLVKELLKPSWHEGRLSKDAHIMIVKKSVDKVVSTLEPHQIPTTVDTAKQYVSSCRAKIAKLVNGYVNKYGKS. 733
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04867 732 MobiDBLite consensus disorder prediction 220 235 - -
Seca6g04867 732 MobiDBLite consensus disorder prediction 537 564 - -
Seca6g04867 732 Pfam Torus domain 214 267 IPR032297 -
Seca6g04867 732 ProSiteProfiles Zinc finger C3H1-type profile. 238 265 IPR000571 GO:0046872
Seca6g04867 732 MobiDBLite consensus disorder prediction 1 27 - -
Seca6g04867 732 MobiDBLite consensus disorder prediction 304 323 - -
Seca6g04867 732 MobiDBLite consensus disorder prediction 161 182 - -
Seca6g04867 732 MobiDBLite consensus disorder prediction 607 626 - -
Seca6g04867 732 Gene3D - 229 308 - -
Seca6g04867 732 PANTHER PROTEIN FRIGIDA-ESSENTIAL 1 221 731 - -
Seca6g04867 732 SMART c3hfinal6 238 264 IPR000571 GO:0046872
Seca6g04867 732 SUPERFAMILY CCCH zinc finger 238 262 IPR036855 GO:0046872
Seca6g04867 732 MobiDBLite consensus disorder prediction 210 235 - -
Seca6g04867 732 MobiDBLite consensus disorder prediction 41 68 - -
Seca6g04867 732 MobiDBLite consensus disorder prediction 45 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04867 Seca-Chr6 116086150 116089636 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca6g04867 Torus 1.1e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04867 - - aprc:113872594 983.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04867 6 116086150 116089636 Seca6g04867 6 116086150 116089636 ECH