Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04865 ATGGCTTCTTCGTCTTCTTCGGCTTCTCGTGAGGGACACTACAGAGGCGTCAGGAAGCGACCCTGGGGACGCTACGCTGCTGAAATACGCGACCCTTGGAAGAAGACACGTGTCTGGTTGGGTACATTTGATACTCCTGAAGAGGCTGCTCTTGCCTACGACGGCGCCGCTCGTTCCCTCCGTGGTGCTAAGGCCAAGACCAACTTCCCTCCGGCGCCGGTCGCCCCGGCCCTCTGCCTCGACCTCAACGCCCCAACCTCCGATCATCATCGCTGGCCTTCCGTCCCCACACGCGGCCTTGTCCTCAGCGAGTTTCTTCACACCGGCGTTCTCAAAGACATCCACAACCCACCTCAGCCTCCACCTCCCGCCGTCGTGGCCGGACACAGGCGTGTCGACGGCGCTGTAGCTGTTTCCGGTGTGACTCAGATGGCGGAGGCTTCCCCGACGGCGTCGTTTCTAGGACTCGTTCGGCGCGGGATTCCCATTGACTTGAACGAACCTCCACCGTTGTGGCTATGA 522 0.613 MASSSSSASREGHYRGVRKRPWGRYAAEIRDPWKKTRVWLGTFDTPEEAALAYDGAARSLRGAKAKTNFPPAPVAPALCLDLNAPTSDHHRWPSVPTRGLVLSEFLHTGVLKDIHNPPQPPPPAVVAGHRRVDGAVAVSGVTQMAEASPTASFLGLVRRGIPIDLNEPPPLWL. 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04865 173 FunFam Ethylene-responsive transcription factor 2 13 71 - -
Seca6g04865 173 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Seca6g04865 173 PRINTS Ethylene responsive element binding protein signature 36 52 IPR001471 GO:0003700|GO:0006355
Seca6g04865 173 ProSiteProfiles AP2/ERF domain profile. 13 70 IPR001471 GO:0003700|GO:0006355
Seca6g04865 173 Pfam AP2 domain 13 62 IPR001471 GO:0003700|GO:0006355
Seca6g04865 173 SMART rav1_2 13 76 IPR001471 GO:0003700|GO:0006355
Seca6g04865 173 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 8 91 - -
Seca6g04865 173 Gene3D AP2/ERF domain 13 71 IPR036955 GO:0003700|GO:0006355
Seca6g04865 173 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Seca6g04865 173 SUPERFAMILY DNA-binding domain 13 70 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04865 Seca-Chr6 116058610 116059131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04865 4 173 AP2-EREBP Transcription Factor Family AT1G28360 46.078 1.13e-46 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g04865 AP2 2.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04865 - - cam:101504196 283.493
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04865 6 116058610 116059131 Seca6g04865 6 116058610 116059131 ECH