Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04855 ATGGGTGTGGACTACTATAAGATTTTGCAGGTTGACAAGAATGCCACAGATGATGAGTTGAAGAAAGCTTACAGAAAGCTTGCCATGAAATGGCACCCTGATAAGAACCCAACCAATAAGAAAGAGGCTGAGACTAAGTTCAAACAGATATCTGAAGCCTACGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGATCAATACGGAGAAGAAGGCCTAAAAGGCCAAGTGCCACCTCCAGATGCTAGTGGTGCTTCATTCTTCCACACTGGGGATGGACCAACAACATTCAGATTCAATCCCAGAAATGCAGACGACATTTTTGCAGAGTTTTTCGGGTTTTCAAGCCCGTTTGGAGGAATGGGAGGTGGTGGTGGAGGTGGCAGTGGAATGAGGGGTGGGTCGAGGTCTTTTGGTGGAATTTTTGGGGATGATATATTTAGTTCATTTGGAGAAGGCAGGCCCATGAGTCAGGGTCCTCGCAAGGCACCTCCCATTGAAAATACATTACCTTGTAGTCTTGAGGAGCTCTATAAGGGAACTACCAAAAAGATGAAAATCTCAAGGGAAATTGCAGATGCAAGCGGGAAAACTTTGCCGGTGGAGGAAATCTTAACCATCGTAATTAAACCAGGTTGGAAAAAGGGGACGAAAATCACATTCCCGGAGAAAGGAAATGAGCAGCCAAATGTTATTGCTGCTGATCTTGTGTTTGTCATTGATGAAAAACCTCACAGTGTATTTACAAGAGATGGTAATGATTTGGTTGTGACACAAAAGGTATCACTTGCTGAAGCTCTAACAGGCTACACTGTCCATCTTACAACTCTAGATGGAAGGAGTTTGACCATTCCCATAAACAATGTGATTCATCCAAACTATGAAGAGGTAGTCCCTAGCGAAGGTATGCCAATTCCAAAAGATCCTTCAAAGAAGGGCAATCTTAGGATCAAATTCAACATCAAATTCCCAGCAAGGTTGACATCAGAGCAGAAAGCCGGAATCAAGAAACTTTTGGCACCATAA 1029 0.4334 MGVDYYKILQVDKNATDDELKKAYRKLAMKWHPDKNPTNKKEAETKFKQISEAYEVLSDPQKRAIYDQYGEEGLKGQVPPPDASGASFFHTGDGPTTFRFNPRNADDIFAEFFGFSSPFGGMGGGGGGGSGMRGGSRSFGGIFGDDIFSSFGEGRPMSQGPRKAPPIENTLPCSLEELYKGTTKKMKISREIADASGKTLPVEEILTIVIKPGWKKGTKITFPEKGNEQPNVIAADLVFVIDEKPHSVFTRDGNDLVVTQKVSLAEALTGYTVHLTTLDGRSLTIPINNVIHPNYEEVVPSEGMPIPKDPSKKGNLRIKFNIKFPARLTSEQKAGIKKLLAP. 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04855 342 MobiDBLite consensus disorder prediction 150 169 - -
Seca6g04855 342 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 340 - -
Seca6g04855 342 CDD DnaJ 4 59 IPR001623 -
Seca6g04855 342 SMART dnaj_3 3 62 IPR001623 -
Seca6g04855 342 FunFam DnaJ subfamily B member 13 3 123 - -
Seca6g04855 342 Gene3D - 166 244 - -
Seca6g04855 342 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca6g04855 342 PRINTS DnaJ domain signature 24 39 IPR001623 -
Seca6g04855 342 PRINTS DnaJ domain signature 62 81 IPR001623 -
Seca6g04855 342 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca6g04855 342 Pfam DnaJ domain 4 67 IPR001623 -
Seca6g04855 342 Gene3D DnaJ domain 3 127 IPR036869 -
Seca6g04855 342 Pfam DnaJ C terminal domain 167 325 IPR002939 -
Seca6g04855 342 SUPERFAMILY Chaperone J-domain 3 130 IPR036869 -
Seca6g04855 342 CDD DnaJ_C 165 328 - -
Seca6g04855 342 Gene3D - 246 325 - -
Seca6g04855 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 161 252 IPR008971 GO:0006457|GO:0051082
Seca6g04855 342 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Seca6g04855 342 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Seca6g04855 342 FunFam DnaJ subfamily B member 13 246 326 - -
Seca6g04855 342 SUPERFAMILY HSP40/DnaJ peptide-binding domain 248 334 IPR008971 GO:0006457|GO:0051082
Seca6g04855 342 FunFam Dnaj homolog subfamily b member 163 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04855 Seca-Chr6 115952234 115954562 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04855 5 69 C2H2 Transcription Factor Family AT1G74250 40.580 1.17e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04855 K09510 - zju:107425032 582.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04855 6 115952234 115954562 Seca6g04855 6 115952234 115954562 ECH