Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04854 ATGGGTGTGGACTACTATGAGATTTTGGAGGTTGATAGGAATGCAACAGATGAAGAATTGAAGAAAGCTTACAGAAAACTTGCCATGAAATGGCACCCTGACAAGAACCCCGACAATAAGAATGAGGCTGAAACTAAATTCAAACTCATATCTGAAGCCTATGAGGTTCTAAGTGATCCCCAGAAGAGAGCAATTTATGATCGGTATGGAGAAAGCAGCCTTAAAGGTGGAATGCCACCACCGGATGCGGGTTTAGATTCATTCTTCCAGACTGGGGGTGGCCCAACAACGTTTAGGTTCAATCCTAGGGATCCAAATGGCATTTTTGCAGAAGTATTTGGCTTTTCAAGCCCATTTGGAAGAATGGGAATGGGAGTTGGTGGTTGTGGTAGAGGCATGGGGGGTGGGTCGTGGGTGTCAAGGTCCTTTGGAGGAATGTTTGGCAAAGACATATTTGGAGAAGGTAGGCCCATGAGTCAAGGTCCACGACGCAAGGCACCTCCCATCGAGAATACATTACCTTGCAGCCTTGAGGAACTCTATAAGGGTACTACCAAAAAGATGAAGATCTCAAGGCAAATTTCACATGCAAGCGGTAAAACTCAGCTTGTGGAGGAAATACTAATCATTGAAATCCAACCAGGCTGGAAAAAGGGAACAAAAATCACTTTCCCAGAAAAAGGAAATGAGCAACCAAATGTTATTGCTGCAGATCTAGTGTTCATTATTGATGAAAAACCTCACAGCATATTTACAAGAGATGGTAATGATTTGGTCATGACACAAAAGATATCACTTGCAGAAGGTGAAGTTCTTACTGGCTACACCTTCCAACTTACAACTCTAGATGGCAGGGGTCTAACCATTGCCATAAACAATGTGATTGATCCAAACTATGAAGAAGTGATCACTGGGGAAGGTATGCCAATTTCCAAAGATCCTTCACAGAGGGGTAACCTTAGGATCAAATTCAACATCAATTTCCCAAGCATTGTTGATGCCGGGGTAGAAAACTAG 1017 0.4307 MGVDYYEILEVDRNATDEELKKAYRKLAMKWHPDKNPDNKNEAETKFKLISEAYEVLSDPQKRAIYDRYGESSLKGGMPPPDAGLDSFFQTGGGPTTFRFNPRDPNGIFAEVFGFSSPFGRMGMGVGGCGRGMGGGSWVSRSFGGMFGKDIFGEGRPMSQGPRRKAPPIENTLPCSLEELYKGTTKKMKISRQISHASGKTQLVEEILIIEIQPGWKKGTKITFPEKGNEQPNVIAADLVFIIDEKPHSIFTRDGNDLVMTQKISLAEGEVLTGYTFQLTTLDGRGLTIAINNVIDPNYEEVITGEGMPISKDPSQRGNLRIKFNINFPSIVDAGVEN. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04854 338 SMART dnaj_3 3 62 IPR001623 -
Seca6g04854 338 FunFam Dnaj homolog subfamily b member 165 246 - -
Seca6g04854 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 251 331 IPR008971 GO:0006457|GO:0051082
Seca6g04854 338 CDD DnaJ_C 167 330 - -
Seca6g04854 338 SUPERFAMILY HSP40/DnaJ peptide-binding domain 163 259 IPR008971 GO:0006457|GO:0051082
Seca6g04854 338 CDD DnaJ 4 59 IPR001623 -
Seca6g04854 338 Gene3D DnaJ domain 3 123 IPR036869 -
Seca6g04854 338 PANTHER DNAJ HOMOLOG SUBFAMILY C MEMBER 1 330 - -
Seca6g04854 338 ProSiteProfiles dnaJ domain profile. 4 70 IPR001623 -
Seca6g04854 338 Gene3D - 168 246 - -
Seca6g04854 338 FunFam DnaJ subfamily B member 13 248 330 - -
Seca6g04854 338 FunFam DnaJ subfamily B member 13 3 123 - -
Seca6g04854 338 SUPERFAMILY Chaperone J-domain 3 100 IPR036869 -
Seca6g04854 338 Gene3D - 248 330 - -
Seca6g04854 338 PRINTS DnaJ domain signature 6 24 IPR001623 -
Seca6g04854 338 PRINTS DnaJ domain signature 42 62 IPR001623 -
Seca6g04854 338 PRINTS DnaJ domain signature 24 39 IPR001623 -
Seca6g04854 338 PRINTS DnaJ domain signature 62 81 IPR001623 -
Seca6g04854 338 ProSitePatterns Nt-dnaJ domain signature. 47 66 IPR018253 -
Seca6g04854 338 Pfam DnaJ domain 4 67 IPR001623 -
Seca6g04854 338 Pfam DnaJ C terminal domain 169 329 IPR002939 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04854 Seca-Chr6 115947724 115950976 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04854 5 69 C2H2 Transcription Factor Family AT1G74250 39.130 2.52e-09 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04854 K09510 - gmx:100794650 525.013