Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04853 ATGGAGAACGAGGCTGCTTCAGAGGCAGAGAACAATTCCCAGAAGAGGGACGATGCGGGTGACAATAACAGCAATGACGACAACAACAACAACAACAATGGAAGCAACAGCAAAATTGTGAATTCCAGTGAGGGTCAGAGTAAGCCCAAGCGCCAGATGAAGACTCCTTTTCAGCTTGAAACGCTTGAGAAAGCTTATGCTTTGGAGACGTACCCATCGGAGGCGATGAGGGCGCAACTGTCGGAGAAGTTGGGGTTGTCGGATCGGCAGTTGCAGATGTGGTTTTGTCACCGGCGGTTGAAGGACAAGAAGGACTTGCCGCCAAAGAAGCCAAAGAAGGCGCATACTTTGCCGGATTCTCCTACTGATGACCCGAGATTGGGCCCCGAGCTCGGTAATGACTACGGATCCGGGTCGGGCTCTGGGTCAAGTCCTTTCACCCGTTCGGAGTTGCGGAATGTGGGGCCCCGGGGCGTGCCAGGGTACTATGAGTCACCACAGACTATAATGGAACTTAGAGCAATTGCTTGTGTGGAGGCACAGTTAGGGGAGCCTTTGAGGGAAGATGGACCCATTCTAGGAGTGGAGTTTGATCCATTGCCACCGGATGCATTCGGGGCACCCATTGCTGTTACGGAACAGCAAAAGCGGCCTAGTCTTGCCTACGACAGTAAAATATATGAAAGACATGATGTTAGAACACATAAGGCAATAGCAAGGACATTCCCTGAATATCCATTTCTTCCGAATCAGCCTGGCATTAAATCTGAAGCTTTTGGACAATTGAGTCAACCTCATTCATATGATCCAATGGAGGGTTCTGCCAGAACTCCTTCTTTTCCCCTTGGAAATGAACATTTACCCAGAGTTCATGCTACCCAAAGTCATTCTTCTCGTGTTCGCCTTTTGTCTCAACAGGACAAGCAACTGATTCCCTATCCATCTCCTCCTCGAGACAATGATGTCATCCCGAAAAGGGAACCCCACACAAGCATATCCAATACTGGAACAAGCTCCCAATTCACAGATCACGCAACTGTCAAACAAGAAAATCCTCATGCTTCACCTGCTGGACAAGTTTTCCATAATGATGCAATATTGCGGATGGAGAGGAAACGGAAGAGTGATGAAGCCAGGGTTGCAAAGGAAGTTGAAGCCTATGAAATGAGGATGCGGAAAGAGCTTGAGAAACAAGATAACCTTAGACGAAAGAGTGAAGAGCGATTGAGGAAAGAAATGGAAAGACAAGATCGTGAAAGAAGGAAGGAAGAAGAGAGGCTGATGCGTGAGAGACAGCGAGAAGAGGAAAGATCAAAGCGTGAGCAAAGACGGGAGATGGAACGGAGGGAAAAGTTTTTACTGAAAGAACATTTAAGAGCTGAGAAAAGGAGGCGAAAAGAAGAGCTTCGCAAAGAGAAAGAAGCAGAGAGAAGGAAAGCTGCCCTTGAAAAGGCAACTGCTCGTAGAATAGCTAAAGAGTCTATGGAGCTTATTGAGGATGAACAGCTTGAATTGATGGAGTTGGCTGCAGCAAGCAAGGGACTTACCTCTATTATCCACATTGATCTTGATACATTGCAAAACCTTGAATCATTTAGGGATTCATTGTGTGTTTTCCCACCCAAGAGTGTACAGCTAAAGAAGCCATTTTCTATCCAGCCCTGGATCAACTCAGAACAAAATGTTGGGAACCTTCTCATGGTTTGGAGATTCTTGATTACTTTTTCTGATGTTCTTGAGCTGTGGCCTTTTACTCTTGATGAGTTTGTACAAGCATTTCATGATTATGATTCAAGATTGTTGGGTGAGATACATGTTGCTCTTCTTAAAGTGATAATAAAAGACATTGAAGATGTTGCAAGGACACCTTCTACAGGATTAGGAATGAACCAGAATGGAGCTGCTAATCCTGGAGGTGGCCATCCAGAGATTGTGGAAGGAGCATATGCATGGGGCTTTGACATACGGAATTGGCAGAAAAACTTAAATCAATTGACATGGCCAGAAATTTTCCGACAGTTAGCACTCTCTGCAGGATTTGGACCACAGCTGAAGAAAAGAAGTGTTATGTGGTCATATGCAAATGATAAAGATGAGGTTCATGGAAGAAGCTGTGAAGATATCATTTCTACACTTCGTAATGGTTCAGCAGCTGAAAGTGCAGTGGCGAAAATGCAAGAGAAAGGTCTATTAGCTCCTCGAAGATCAAGGCATCGGTTAACTCCTGGAACAGTTAAATTTGCAGCATTTCACGTTCTCTCACTGGAGGGTAGCAAGGGTTTAACAGTACTAGAGCTTGCAGAAAAAATTCAGAAATCTGGTCTTCGGGACCTGACAACTAGCAAGACTCCTGAAGCATCAATTTCTGTTGCTTTGACAAGAGATGCTAAACTTTTTGAAAGGATAGCTCCATCAACATATCGTGTACGGGCTGCATTTAGAAAGGATCCTGCTGATGCTGAATCCATTCTTTCAGAAGCAAGAAAGAAAATTCAGATATTTGAAAATGGGTTTCTAGCTGGTGAAGATGCTGACGATGTTGAAAGAGAAGAAGAGTCAGAAAGTGATGATGAAGTTGATGAGGATCCTGAAGACGATGATTTAGTAAATCCTTCAAGGGAAAACCAAAATCCAGAACAGTATGATGACACAAACACTTGCTCATCAAATGGGAAAGAAAATTTGGGTCATGATGTAGACCTTATTCAAAATGAGTTTGATACGGATCTGCCTTGTTTTCTTGAGAATGGTTCCAAGGATGCTGAATGTCCTAGTTCTGTCACAGGACAACCTGTTGCATGTGAAGATTTAAATACTGAAAATCTTGATGAAGATAATATGGAAATCGATGAAAGTAAGTCTGGTGAATCCTGGGTTCAAGGGCTTACCGAAGGAGAATATTCTGATCTCAGTGTAGAGGAGCGTCTAAATGCTCTTGTTGCATTGGTTGGTATGGCAAATGAAGGAAATTCAATCCGTGTTGTTCTTGAGGATCGATTGGAAGCAGCAAATGCTCTGAAGAAGCAAATGTGGGCAGAAGCACAGATAGATAAAGTTCGTCTAAAAGATGATAATATTGGTAAATCAGATTTTCCATCTCTTATTGGGAATAAAGTTGAGATACAATACACATATCCCGTTGTGGAGGGAAACCAAAGCCCATTGCTTGACATTAATATTAGCAATGTTAATAATGAAGCATCACCCAGCACTGCCGAAATCCAAAAAGGAGCTCCCATTACACAACACCTGCCTATGGAAAAGTCCTCATCAACTCAAGATTTCTGCACAGGCACAGGTCTAGACAACCCTCAGACTCAGGCACCTCCACAATATTCAAAAAGGTCACGTTCACAGTTGAAATCTTATATTGCCCACATGGCAGAGGAGATGTATGTCTACAGGTCTTTACCCCTTGGCCAAGATCGCAGACGTAATCGATATTGGCAATTTGTTGCATCTGCATCTAGCAATGATCCTGGTTCTGGCAGGATCTTCGTTGAACATCATGATGGCAATTGGAGGCTCATTGATTCTGAAGAGGCCTTTGATGCTCTTTTGAAATCACTGGATTCACGTGGGATCAGGGAATCTCATTTACGAATAATGTTGAAAAAGATTGAGAATTCCTTTAAAGGAAATGTTCGAAAGAATACACAATGTGCCAAAATTGGAAGCAGAGGTGAAGTTTCTATTAAAAATGAAGCTAATGAAACATATCCTATCCCTGATCACCATGCTGGATCTGCCAGTCCCAGCAGTACCCTTCTTGACTTGAACTCTGGTGCATCTGAAACTTCATCATCCTTCAAAATTGAGCTTGGGAAAAGTGAGAGCGAGAAAAAAGCTGCCTTCAGAAGGTATCAAGATTTTCAAAAGTGGATGTGGAAAGAATGCTATAATCCATCAATTTTATGTGCAATGAAATATGGCATAAAGAGATGCAAACCTCAGGTGGACATTTGTGATATCTGTCTCAATCCTTATTTTGTTGAAGACTTCCATTGCAATTCCTGCCATCGGACTTTTCCCTCAAATAATGGATTTAATTTTTCTAAACATGCATTTCAATGTGGAGAAAAATTATCGAAAGATACTTGTGTTTTGGAATATTCTCTCCCCTTACGGACAAGATTGCTTAAGGTCCTGTTGGCTTGTATGGAGGTATCTGTTCTCTCTGAAGCATTTGGAACAATTTGGACTGATAATATTAGGAGGCATTGGGGTGTGAAGTTGAGTAAATCGTCTTCTGTTGAGGAACTTTTGAAGATATTGACTCTATTTGAAAGAGCACTACGGCGAGATTTTCTGTCATCAAACTTCTCTACAACAGATGAGTTGCTGGGATCAGGCAATTTGTCAGGAAATTCTGCACATGCTTCTACTGATCCTGAATCAGTTGCTGTACTTCCATGGGTTCCACAAACCACTGCAGCTTTGTCTCTCAGGCTTTTTGAGTTTGATTCATCCATCAGCTATGTAAAGCTCGAGAAAGTTGAGCCTTGTGAGGAGAAAGAAGCGACACAACAAGTAAAGCTTCCCTCAAGATATACCCCCTTCAAATCTAATAGGGAGGTTGAACCAGCAGAATTTGACCATGATGTATTCACCAGAGATAAATCTGCTCCTAATAAAATTGTAAGAAGTGGCAATAAACGTGGACGGGGGACTAATGATCAAGGACGGGGTAAAAAACTGTCTAAAAGAATGTACAATTCCAAACGAGATACTGGCCGCCGAAATGTTAAGGTCACTGAGAATCTAAGTCACAAATTAAAACAGCAGGGACGAGGAACACAAGGACAAGGTGGTGGACGAGGTCGTCGAACGGTCAGGAAACGGAGAGTAGAAAAGAGAGCTGTTGAAGATTTGTTGCTGGGTCATACAGCACCCAGTCATAGCTCCAAGAGTGGTAGAGAATCATTGAGAAGCTTGGATGAGGAATGGGATGGAGAAAAGGCCAGTCCCATGGCCAGTCCCATGACTCCTGTACACATTGGGGTTGCTGACAATAGTGCTGAAGAGGTGGAATCTGATGACAATGCTCAAGCAGTGGAATATGATCAAGGAAACTGGGAGGTAGGTTATAATGGTGTCCCTCCTAACCGATGGAGTAGAGATATGGTTGTAATGAGTGATGAAGATGCAGATGCTTTTGAAGATGACAATGACAATGACAATGGAATTGAAGAGAACGAAGAGGAGGAGGATTCGGAGGCAGATGTTATGAGTGAGGGTTCAGATGGCATGGCAAATAGAGTAGTAAACGCAGGAGGCTCTGACTCGGCTCTGTCTGAAGATTCTTCTGATTAG 5313 0.4301 MENEAASEAENNSQKRDDAGDNNSNDDNNNNNNGSNSKIVNSSEGQSKPKRQMKTPFQLETLEKAYALETYPSEAMRAQLSEKLGLSDRQLQMWFCHRRLKDKKDLPPKKPKKAHTLPDSPTDDPRLGPELGNDYGSGSGSGSSPFTRSELRNVGPRGVPGYYESPQTIMELRAIACVEAQLGEPLREDGPILGVEFDPLPPDAFGAPIAVTEQQKRPSLAYDSKIYERHDVRTHKAIARTFPEYPFLPNQPGIKSEAFGQLSQPHSYDPMEGSARTPSFPLGNEHLPRVHATQSHSSRVRLLSQQDKQLIPYPSPPRDNDVIPKREPHTSISNTGTSSQFTDHATVKQENPHASPAGQVFHNDAILRMERKRKSDEARVAKEVEAYEMRMRKELEKQDNLRRKSEERLRKEMERQDRERRKEEERLMRERQREEERSKREQRREMERREKFLLKEHLRAEKRRRKEELRKEKEAERRKAALEKATARRIAKESMELIEDEQLELMELAAASKGLTSIIHIDLDTLQNLESFRDSLCVFPPKSVQLKKPFSIQPWINSEQNVGNLLMVWRFLITFSDVLELWPFTLDEFVQAFHDYDSRLLGEIHVALLKVIIKDIEDVARTPSTGLGMNQNGAANPGGGHPEIVEGAYAWGFDIRNWQKNLNQLTWPEIFRQLALSAGFGPQLKKRSVMWSYANDKDEVHGRSCEDIISTLRNGSAAESAVAKMQEKGLLAPRRSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELAEKIQKSGLRDLTTSKTPEASISVALTRDAKLFERIAPSTYRVRAAFRKDPADAESILSEARKKIQIFENGFLAGEDADDVEREEESESDDEVDEDPEDDDLVNPSRENQNPEQYDDTNTCSSNGKENLGHDVDLIQNEFDTDLPCFLENGSKDAECPSSVTGQPVACEDLNTENLDEDNMEIDESKSGESWVQGLTEGEYSDLSVEERLNALVALVGMANEGNSIRVVLEDRLEAANALKKQMWAEAQIDKVRLKDDNIGKSDFPSLIGNKVEIQYTYPVVEGNQSPLLDINISNVNNEASPSTAEIQKGAPITQHLPMEKSSSTQDFCTGTGLDNPQTQAPPQYSKRSRSQLKSYIAHMAEEMYVYRSLPLGQDRRRNRYWQFVASASSNDPGSGRIFVEHHDGNWRLIDSEEAFDALLKSLDSRGIRESHLRIMLKKIENSFKGNVRKNTQCAKIGSRGEVSIKNEANETYPIPDHHAGSASPSSTLLDLNSGASETSSSFKIELGKSESEKKAAFRRYQDFQKWMWKECYNPSILCAMKYGIKRCKPQVDICDICLNPYFVEDFHCNSCHRTFPSNNGFNFSKHAFQCGEKLSKDTCVLEYSLPLRTRLLKVLLACMEVSVLSEAFGTIWTDNIRRHWGVKLSKSSSVEELLKILTLFERALRRDFLSSNFSTTDELLGSGNLSGNSAHASTDPESVAVLPWVPQTTAALSLRLFEFDSSISYVKLEKVEPCEEKEATQQVKLPSRYTPFKSNREVEPAEFDHDVFTRDKSAPNKIVRSGNKRGRGTNDQGRGKKLSKRMYNSKRDTGRRNVKVTENLSHKLKQQGRGTQGQGGGRGRRTVRKRRVEKRAVEDLLLGHTAPSHSSKSGRESLRSLDEEWDGEKASPMASPMTPVHIGVADNSAEEVESDDNAQAVEYDQGNWEVGYNGVPPNRWSRDMVVMSDEDADAFEDDNDNDNGIEENEEEEDSEADVMSEGSDGMANRVVNAGGSDSALSEDSSD. 1771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04853 1770 Pfam Williams-Beuren syndrome DDT (WSD), D-TOX E motif 1135 1207 IPR028941 -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 9 23 - -
Seca6g04853 1770 Coils Coil 384 486 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 327 353 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 1239 1262 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 291 311 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 24 54 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 291 363 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 844 868 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 136 150 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 1 58 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 102 120 - -
Seca6g04853 1770 ProSiteProfiles DDT domain profile. 559 618 IPR018501 -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 873 893 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 398 446 - -
Seca6g04853 1770 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 954 997 IPR028942 -
Seca6g04853 1770 Pfam HB1, ASXL, restriction endonuclease HTH domain 743 811 IPR007759 GO:0006355
Seca6g04853 1770 MobiDBLite consensus disorder prediction 102 158 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 1248 1262 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 1555 1587 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 840 895 - -
Seca6g04853 1770 PANTHER HOMEOBOX-DDT DOMAIN PROTEIN RLT2 33 1770 IPR044977 GO:0006357
Seca6g04853 1770 ProSiteProfiles HARE-type HTH domain profile. 743 812 IPR007759 GO:0006355
Seca6g04853 1770 Pfam Homeodomain 48 104 IPR001356 GO:0003677
Seca6g04853 1770 Pfam DDT domain 561 615 IPR018501 -
Seca6g04853 1770 Gene3D - 31 106 - -
Seca6g04853 1770 SMART HOX_1 47 109 IPR001356 GO:0003677
Seca6g04853 1770 MobiDBLite consensus disorder prediction 1714 1743 - -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 1085 1114 - -
Seca6g04853 1770 SUPERFAMILY Homeodomain-like 34 104 IPR009057 -
Seca6g04853 1770 MobiDBLite consensus disorder prediction 1541 1770 - -
Seca6g04853 1770 ProSiteProfiles 'Homeobox' domain profile. 45 105 IPR001356 GO:0003677
Seca6g04853 1770 CDD homeodomain 50 99 IPR001356 GO:0003677
Seca6g04853 1770 MobiDBLite consensus disorder prediction 1639 1653 - -
Seca6g04853 1770 SMART testlast3 559 618 IPR018501 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04853 Seca-Chr6 115936203 115947223 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04853 41 1697 Homeobox Transcription Factor Family AT1G28420 49.078 0.0 1337
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Seca6g04853 WSD 8e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04853 - - gmx:100777465 2653.24