Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04848 ATGCCTCCTCCCCTGTTTCCCCTGTTCCTCTTCCTCCTCCTCCTCCTCCTACCTGCCACCATTTCCGGTCTCAACCAAGAGGGTCTGTACCTCTACCAGTTCAAGCTCTCCGTGGACGACCCAGACTCATCCCTCTCCACGTGGAACAACCGTGACCCCACCCCCTGTAACTGGGCCGGCGTCACTTGCGACCCCACCAACACCACGGTCACCGAACTTAACCTCTCCAACGCCAACATCGGAGGCCCATTCCCCGCTTCCCTCCTCTGTCGCCTCACCAATCTCACCTCCATCATCCTCACGAACAACTCCATCAACTCCACCCTCCCTCTCGACATCTCCCTCTGCACCTCCCTCATCCACCTTGACCTCTCCCAAAACCTCCTCACCGGTACACTTCCCCACACTCTATCCCTCCTCCCCAACCTCCGTCACCTCGATTTAACCGCTAACAACTTCTCCGGCTCCATCCCTGACTCCTTCGGAACCTTCCAGAGCCTCGAGGTTATCTCCCTCGTCTACAACCTTCTTGACTCCACCATACCTGCTTCCCTCGGCAACATCACCACACTCAAGATGCTTAACCTCTCTTACAACCCCTTTCTCCCCGGTCAGATCCCGCCGGAGCTTGGGAACCTCACCAACCTCGAGATCCTCTGGCTCAGTTCCTGTAACCTTGTAGGCGCCATCCCTGACTCCTTCGGGAATCTCAAGAAGCTTAAGGACTTGGACCTTGCGTTAAACAACCTCTACGGGTCAATTCCGAGTTCACTCACTCGGATGACGAGTTTGAAGCAGATTGAGTTGTATAACAACTCGTTATCCGGTGAGTTTCCTCGTGGAATGTCGAACCTCACCGCGTTGAGGCTCATTGACGTGTCCATGAACCATCTAACTGGCGCCATTCCCGACGAATTGTGCCGTTTGCCGTTGGAGAGTCTTAACCTCTACGAGAATCGGTTCGCCGGCGAATTGCCGCCGAGTATAGCCAATTCTCCCAACCTCTATGAACTCAGGTTGTTTGGGAACTCGCTCTCCGGTGAGTTGCCGGAAAATCTTGGTAAGAATTCTCCGTTGAGGTGGCTTGATGTTTCCAGCAACAACTTCTCTGGTAAGATTCCGGAGACACTGTGTGATCACGGCGCGTTGGAGGAGGTTCTGATGATAGAGAACTCGTTCTCCGGGGAGATTCCGGCGAGTTTGGGCGCATGTCAGAGTTTGACGCGTGTCAGGTTCGGTTACAATCGATTTTCCGGTGAAGTTCCGGCAGGTGTGTGGGGGCTTCCGCATGTGTATTTGCTTGAACTGGTTGATAACTCGTTTTCTGGTTCAATCGCCGGAACCATTGCTCGGGCGGGGAATCTGTCTCTGTTGATGGTGTCGAATAACAATTTCTCGGGTGCGATCCCCAAAGAGATTGGATGGTTGGAAAATCTTCAGGAATTTTCCGGTGGTGATAACAAGTTCAATGGTTCTCTTCCTGAAAGTATTGTGAATCTTGGGCAGCTTGGGACCCTTGATCTTCATAATAATAAGCTCTCTGGGGAGCTTCCTAAAGGGATTCAATCTTTGAAGAAGCTCAACGAGTTGAATTTGGCTAATAATGAGATTGGTGGGAAAATCCCTGATGAAATTGGGAGTTTGTCTGTGCTTAATTTTCTTGATCTGTCTAATAACCAATTTTCCGGTAATGTCCCTCTGGGCTTGCAGAATTTGAAGCTCAATCAGCTTAATTTGTCTTACAATCGGCTTTCTGGAAACATTCCCCCTCTGCTGGCTAAGGATATGTACAGGGATAGTTTTATGGGTAATCCTGGTTTGTGTGGGAATTTGAAAGGTTTGTGTGATGGCAAGGGTGAGGATAGGAGTGCGGGTTTTGTTTGGTTGCTTCGAACTATTTTCATAGTTGCTACTTTGGTGTTTGTTATTGGGGTGGTTTGGTTCTACTTCAAGTACAGGAATTTCAAGAATGCTAGAAGATCTATTGATAAATCCAAGTGGACATTGATGTCATTTCATAAACTGGGTTTTGGTGAAGATGAGATCTTGAACTGCCTCGATGAAGATAATGTGATAGGAAGTGGATCATCAGGGAAAGTCTACAAGGTTGTACTTAGCAATGGGGAAGCTGTTGCCGTGAAGAAAATATGGGGAGGGGTCAGAAAGGAAATAGAGAGTGAGGATATTGAAAAGGGTCGGTTTCAAGACAATGCTTTTGATGCTGAAGTTGAAACTTTGGGCAAAATTAGGCACAAGAACATTGTTAAGCTATGGTGTTGCTGCACCACCAGGGATTGCAAGTTATTGGTTTATGAGTATATGCCAAATGGTAGTCTTGGTGATTTGCTGCATAGCAGTAAAGGAGGGTTGCTGGATTGGCCAACTAGGTATAAGATAGCTGTTGATGCTGCAGAAGGCCTCTCTTATCTGCATCATGACTGTGTTCCCCCAATTGTCCATAGAGATGTGAAATCTAATAACATCTTGTTGGACGGGGACTTTGGTGCAAGGGTGGCAGATTTTGGAGTGGCTAAGGTAGTAGATTCCACCGGTAAAGGAACTAAATCCATGTCCATCATAGCTGGGTCTTGTGGGTATATTGCACCAGAATATGCATACACGCTTAGAGTGAATGAGAAGAGCGACATATATAGTTTTGGTGTTGTCATACTTGAGTTGGTTACTGGAAGACGGCCGGTAGATCCTGAATTTGGGGAAAAAGATTTGGTTATGTGGACATGCACCACCTTGGATCAGAAAGGCGTGGATCATGTGCTTGACTCCAGGCTTGATTCTTGTTTCAAAGAAGAAATTTGCAAGGTCCTCAACATTGGCCTCATGTGCACTAGCCCTCTTCCAATTAACAGGCCTGCAATGAGAAGAGTGGTGAAGATGTTACAAGAAGTGGGAACAGAAAACCAAACGAAGCCTGTCAACAAAGATGGGAAGTTATCCCCTTATTACTATGACGATGGATCAGATCATGGAAGTGTTGCTTAA 3000 0.4773 MPPPLFPLFLFLLLLLLPATISGLNQEGLYLYQFKLSVDDPDSSLSTWNNRDPTPCNWAGVTCDPTNTTVTELNLSNANIGGPFPASLLCRLTNLTSIILTNNSINSTLPLDISLCTSLIHLDLSQNLLTGTLPHTLSLLPNLRHLDLTANNFSGSIPDSFGTFQSLEVISLVYNLLDSTIPASLGNITTLKMLNLSYNPFLPGQIPPELGNLTNLEILWLSSCNLVGAIPDSFGNLKKLKDLDLALNNLYGSIPSSLTRMTSLKQIELYNNSLSGEFPRGMSNLTALRLIDVSMNHLTGAIPDELCRLPLESLNLYENRFAGELPPSIANSPNLYELRLFGNSLSGELPENLGKNSPLRWLDVSSNNFSGKIPETLCDHGALEEVLMIENSFSGEIPASLGACQSLTRVRFGYNRFSGEVPAGVWGLPHVYLLELVDNSFSGSIAGTIARAGNLSLLMVSNNNFSGAIPKEIGWLENLQEFSGGDNKFNGSLPESIVNLGQLGTLDLHNNKLSGELPKGIQSLKKLNELNLANNEIGGKIPDEIGSLSVLNFLDLSNNQFSGNVPLGLQNLKLNQLNLSYNRLSGNIPPLLAKDMYRDSFMGNPGLCGNLKGLCDGKGEDRSAGFVWLLRTIFIVATLVFVIGVVWFYFKYRNFKNARRSIDKSKWTLMSFHKLGFGEDEILNCLDEDNVIGSGSSGKVYKVVLSNGEAVAVKKIWGGVRKEIESEDIEKGRFQDNAFDAEVETLGKIRHKNIVKLWCCCTTRDCKLLVYEYMPNGSLGDLLHSSKGGLLDWPTRYKIAVDAAEGLSYLHHDCVPPIVHRDVKSNNILLDGDFGARVADFGVAKVVDSTGKGTKSMSIIAGSCGYIAPEYAYTLRVNEKSDIYSFGVVILELVTGRRPVDPEFGEKDLVMWTCTTLDQKGVDHVLDSRLDSCFKEEICKVLNIGLMCTSPLPINRPAMRRVVKMLQEVGTENQTKPVNKDGKLSPYYYDDGSDHGSVA. 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04848 999 SUPERFAMILY L domain-like 39 391 - -
Seca6g04848 999 SUPERFAMILY Protein kinase-like (PK-like) 682 966 IPR011009 -
Seca6g04848 999 ProSiteProfiles Leucine-rich repeat profile. 573 595 IPR001611 GO:0005515
Seca6g04848 999 MobiDBLite consensus disorder prediction 974 999 - -
Seca6g04848 999 FunFam Receptor-like protein kinase HSL1 310 617 - -
Seca6g04848 999 Pfam Leucine rich repeat 141 200 IPR001611 GO:0005515
Seca6g04848 999 Pfam Leucine rich repeat 215 274 IPR001611 GO:0005515
Seca6g04848 999 Pfam Leucine rich repeat 503 561 IPR001611 GO:0005515
Seca6g04848 999 Gene3D Ribonuclease Inhibitor 311 617 IPR032675 -
Seca6g04848 999 FunFam Receptor-like protein kinase HSL1 670 773 - -
Seca6g04848 999 Gene3D Ribonuclease Inhibitor 23 201 IPR032675 -
Seca6g04848 999 Gene3D Ribonuclease Inhibitor 202 310 IPR032675 -
Seca6g04848 999 Gene3D Transferase(Phosphotransferase) domain 1 774 990 - -
Seca6g04848 999 SUPERFAMILY L domain-like 311 603 - -
Seca6g04848 999 Gene3D Phosphorylase Kinase; domain 1 670 773 - -
Seca6g04848 999 ProSitePatterns Protein kinases ATP-binding region signature. 692 715 IPR017441 GO:0005524
Seca6g04848 999 FunFam Leucine-rich receptor-like protein kinase family protein 206 305 - -
Seca6g04848 999 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 390 969 - -
Seca6g04848 999 ProSiteProfiles Protein kinase domain profile. 686 969 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04848 999 SMART LRR_typ_2 92 116 IPR003591 -
Seca6g04848 999 SMART LRR_typ_2 524 548 IPR003591 -
Seca6g04848 999 SMART LRR_typ_2 213 236 IPR003591 -
Seca6g04848 999 SMART LRR_typ_2 140 163 IPR003591 -
Seca6g04848 999 SMART LRR_typ_2 500 523 IPR003591 -
Seca6g04848 999 SMART LRR_typ_2 237 261 IPR003591 -
Seca6g04848 999 SMART LRR_typ_2 285 309 IPR003591 -
Seca6g04848 999 ProSitePatterns Serine/Threonine protein kinases active-site signature. 818 830 IPR008271 GO:0004672|GO:0006468
Seca6g04848 999 Pfam Protein kinase domain 688 904 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04848 999 SMART serkin_6 686 947 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04848 999 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 774 983 - -
Seca6g04848 999 Pfam Leucine rich repeat N-terminal domain 25 64 IPR013210 -
Seca6g04848 999 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 24 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04848 Seca-Chr6 115897698 115901559 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04848 20 999 Receptor kinase-like Gene Family AT1G28440 70.213 0.0 1418
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca6g04848 Pkinase 1.1e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04848 - - gmx:100776936 1677.53