Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04846 ATGAACCATGGTGAGCATATTGGTTATATTTTGGTTATGGTCACTCTATCCATATCTCTGGTAGTTCTTGGTGTTATCCTGTTTTTCGCTTGCAAGAAGAAACCTGTTGAATCTGAAGAAACACTTCCTGTGAAGCTCTGTGCTCGTGCATACCCCTTGATGGAAATTGATGCTGCAACCGATGGTTTCAATCACAGGAGAATTGTGGGTCAGGGTCGCTTAGGAACTGTGTATGCAGGGACTCTGGAGAAAGAAGAGCTTGTAGCTGTAAAGCGCATTCATCCCTTTCTTGTGTTGAGTAATGCTGGATTTGGTTTCTCATCCGTTTTAAAATGGCTCTCTTTAGCTCAACACCCCAACGTGGTTCCAATAATAGGATTCTCAGAAGCACCAGGTGAGAGAGTTATAGTGATGGAGTTTATTCGCATGTCAAGTTTAGATTTTTACTTGCATCAGAACCAAGATGGGGCTTCCCTTTTGGATTGGAACAAGAGGTTCAGGATTGCAGCTGGAGCAGCTAGGGGGCTTCAATACCTACATGAAGTGGTAGCACCAAACATTGTACATGGGTGTGTTAAGTCCTCTAATGTTCTTATTGATATCAACTTTTGTGCTAGGATTTCTGATTATGGCCTTAACTTTTTGGCATCCTTAGAAAAGAGAGGGCTAGCAGGTTATGTGGATGATGAATATTGGAATGAAGGAAGGGTTGGTGGCGCTTCCAAGGAAAGTGACATTTATGGGTTAGGGGTGATCCTATTGGAGCTTTTAAGTGGGAGAAGATGTGAGGAAGGATTGCTGGTAAAGTGGGCATTGCCTTTGATCAAGGAAGTGAGGTTTAGTGAACTTTTGGATCCTAGGTTGGTGATTCCTTCTGATATTAAGCCTCTGGTTAGATTAGCCAAAGTTGCTTCAGCTTGTGTTGGTAATTTAAGGAAATGTAGACCTTGCGTGTCTCAAGTGGCAACCATTTTGAATAATATAGAGACGGAAGTGTGCCTCTGA 1005 0.4259 MNHGEHIGYILVMVTLSISLVVLGVILFFACKKKPVESEETLPVKLCARAYPLMEIDAATDGFNHRRIVGQGRLGTVYAGTLEKEELVAVKRIHPFLVLSNAGFGFSSVLKWLSLAQHPNVVPIIGFSEAPGERVIVMEFIRMSSLDFYLHQNQDGASLLDWNKRFRIAAGAARGLQYLHEVVAPNIVHGCVKSSNVLIDINFCARISDYGLNFLASLEKRGLAGYVDDEYWNEGRVGGASKESDIYGLGVILLELLSGRRCEEGLLVKWALPLIKEVRFSELLDPRLVIPSDIKPLVRLAKVASACVGNLRKCRPCVSQVATILNNIETEVCL. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04846 334 Pfam Protein tyrosine and serine/threonine kinase 66 321 IPR001245 GO:0004672|GO:0006468
Seca6g04846 334 FunFam Receptor protein kinase CRINKLY4 142 332 - -
Seca6g04846 334 Gene3D Transferase(Phosphotransferase) domain 1 142 332 - -
Seca6g04846 334 FunFam serine/threonine-protein kinase-like protein ACR4 30 140 - -
Seca6g04846 334 PIRSF ILK 30 333 - -
Seca6g04846 334 ProSiteProfiles Protein kinase domain profile. 63 334 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04846 334 Gene3D Phosphorylase Kinase; domain 1 29 140 - -
Seca6g04846 334 PANTHER OS01G0253100 PROTEIN 46 329 - -
Seca6g04846 334 SUPERFAMILY Protein kinase-like (PK-like) 40 325 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04846 Seca-Chr6 115885948 115886952 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04846 48 325 Receptor kinase-like Gene Family AT3G59420 39.726 8.23e-55 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xb-1 Seca6g04846 PK_Tyr_Ser-Thr 5.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04846 - - vun:114187437 592.808