Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04840 ATGGGGTTGATCGATCTCAACACTACAGAGGACGATGAAACTCCATCGTCTGGTGCTTCTTCATCGTCCTCCTCCTCTCACTCGGGCATAAGCACTTCTGCTTCAGCCATGGTTACTCCTCCTCCTCCAGCTCCATCTTCCGTGTGCTTGGAGCTATGGCACGCGTGTGCAGGCCCTCTGATCTCTCTGCCGAAGAAAGGAAGCGTTTTTGTGTACTTCCCTCAAGGACACTTTGAACAGGCTCAGGATTTTCCGGTCACTGCCTATAATATCCCAACTCATGTGTTCTGTCGCGTTCTCGATGTCAAGCTCCACGCAGAGGAAGGGAGCGATGAAGTGTATTGCCAAGTCTTGTTGGTTCCGGAAAGTGAGCAAGTGGAGCAAAACTTGCGGGAAGGGGAAATTGATGCTGATGGGGAAGAGGAGGATACTGAAGCTATGGTGAAGTCAACAACACCCCATATGTTCTGCAAGACTCTGACAGCTTCTGACACTAGCACTCATGGAGGATTCTCAGTGCCTCGTCGAGCAGCTGAAGATTGCTTTCCACCCCTGGATTACAGTCAACAGAGACCTTCACAAGAGCTTGTGGCTAAGGATCTACATGGCCTGGAATGGAGGTTTCGGCATATTTACAGGGGGCAGCCTCGGAGGCATTTGCTCACAACTGGATGGAGTGCTTTTGTGAACAAGAAGAAGCTTGTGTCTGGCGATGCTGTGTTGTTTCTTAGGGGTGAGGATGGGGAACTGAGACTAGGGATTCGTAGGGCAGCTCAATTGAAAAGTCCCGGTTCCTTTGCAGCTCCATCTAATCAGCATTTGAATCCTAGCACTGTCATGGATGTTGTTAATGCCTTATCTACAAGATGTTCATTTAGTGTTTGCTACAATCCAAGGGCCAGTTTGTCAGAATTCATTGTACCTGTCCAAAAATTCTTGAAGAGTCTTGATTGTTCTTATTCAGCTGGAATGAGGTTCAAGATGCGATTTGAAACTGAAGATGCTGCAGAGAGAAGATTCACTGGATTAATTGCTGGAATCAGTGATGTGGATCCTGTTAGATGGCCAGGATCAAAATGGAGATGCCTACTGGTAAGGTGGGATGACATAGAAGCTGGTAGGCATAATAGGGTTTCCCCATGGGAAATTGAGCCATCCAGTTCTGCTCCCACTTCCCATAACTTGATGGCAGCAGGTTTGAAGAGGACTAGGATTGGATTAACTTCAGCAAAGATAGAATTTCCAGTTCCCAATGGAATTGGAACATCAGACTTTGGGGAACCATTAAGGTTCCGGAAGGTCTTGCAAGGTCAAGAAATTTTGGGTGTTAATACTCCCTTGGATGGTATTGATGCTCAGCGTCCCCGGTTGTATGAGCTAGGGAGGTGCTATCCTGGTTCAAACTGTCCTGGCATTGCTGTAACAGGAAATAATATCAGAATTCCTCAAGTGACTTCTGATTTTTCCTCCAATGGCATAGGCTTTAGTGAATCTCTCCGATTCCAGAAGGTCTTGCAAGGTCAAGAAATTCTTCCAAGCCCACCATATGGAAGAGCCCTCCCTGTTGATGAGGCTCGTGGAAATGGTCGCTTTGGACTCTTTGATGGTTATCAGCTTCTTAGCTCCAGAAATGGGTGGTCTGCACAGATGCATGACAATCCTTCACATTTGCATGCATCTGTTGCTTCTGGGCAAGTGTCATCTCCATCATCTGTGTTAATGTTTCAGCAGGCAGTTAATCCAGTTTCAAACTCTGATTATAATAGTAAACGTAATCAAGAGAGGGATGGAAAAGTCTGTTACCAAGGTTCATATGCATCTGAAGTGAAAGGTGGAACATTTGCACCTTCCTTATGTGACAAGCCTATTTTCTCTGGACAAGCTCATGAAGGTGCAAATTCTACTGGTATGCATAATTTTCATAATCAATTGGGCAGTTCAAGGTCTAATGATTCAGTGACAACAGTGAGAGGCAGTCAAGAGCTGGTTTCCTCATGCAAAAATAGCTGCAGACTGTTTGGTTTTTCATTAACTGAGGACACAGTCACACACATTGCAAATAAAGAGCAGCCCTCTACCATTACTTGTCAAATGAATTCTGGACCTTCCTTTACAAGACTTGTTGAAGATGAATTCCATCCAGGCCATTCACTCAGGAGTAAGGGGGTTGGGAGTAACCGCACCAAAGGTGTATTGCAGTGTTGA 2205 0.4571 MGLIDLNTTEDDETPSSGASSSSSSSHSGISTSASAMVTPPPPAPSSVCLELWHACAGPLISLPKKGSVFVYFPQGHFEQAQDFPVTAYNIPTHVFCRVLDVKLHAEEGSDEVYCQVLLVPESEQVEQNLREGEIDADGEEEDTEAMVKSTTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYSQQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFLRGEDGELRLGIRRAAQLKSPGSFAAPSNQHLNPSTVMDVVNALSTRCSFSVCYNPRASLSEFIVPVQKFLKSLDCSYSAGMRFKMRFETEDAAERRFTGLIAGISDVDPVRWPGSKWRCLLVRWDDIEAGRHNRVSPWEIEPSSSAPTSHNLMAAGLKRTRIGLTSAKIEFPVPNGIGTSDFGEPLRFRKVLQGQEILGVNTPLDGIDAQRPRLYELGRCYPGSNCPGIAVTGNNIRIPQVTSDFSSNGIGFSESLRFQKVLQGQEILPSPPYGRALPVDEARGNGRFGLFDGYQLLSSRNGWSAQMHDNPSHLHASVASGQVSSPSSVLMFQQAVNPVSNSDYNSKRNQERDGKVCYQGSYASEVKGGTFAPSLCDKPIFSGQAHEGANSTGMHNFHNQLGSSRSNDSVTTVRGSQELVSSCKNSCRLFGFSLTEDTVTHIANKEQPSTITCQMNSGPSFTRLVEDEFHPGHSLRSKGVGSNRTKGVLQC. 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04840 734 Gene3D - 319 392 - -
Seca6g04840 734 MobiDBLite consensus disorder prediction 9 37 - -
Seca6g04840 734 CDD B3_DNA 154 256 IPR003340 GO:0003677
Seca6g04840 734 Pfam B3 DNA binding domain 156 257 IPR003340 GO:0003677
Seca6g04840 734 Gene3D - 154 258 IPR015300 -
Seca6g04840 734 MobiDBLite consensus disorder prediction 1 41 - -
Seca6g04840 734 SMART B3_2 156 258 IPR003340 GO:0003677
Seca6g04840 734 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 47 690 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca6g04840 734 ProSiteProfiles B3 DNA-binding domain profile. 156 258 IPR003340 GO:0003677
Seca6g04840 734 FunFam Auxin response factor 319 390 - -
Seca6g04840 734 Coils Coil 123 143 - -
Seca6g04840 734 SUPERFAMILY DNA-binding pseudobarrel domain 149 270 IPR015300 -
Seca6g04840 734 FunFam Auxin response factor 154 258 - -
Seca6g04840 734 Pfam Auxin response factor 283 363 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04840 Seca-Chr6 115823309 115829334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04840 155 513 B3 DNA Binding Superfamily AT2G33860 60.055 6.00e-145 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Seca6g04840 B3 2.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04840 K14486 - gmx:100789906 1174.84