Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04839 ATGGAGATCAACCAAAGGCATGGAGCTGAAGAACTGTTTCAAGCTCAGACCCATTTATATAAATATACTTACAGTTTCATTGCTTCCATGTGCCTGAAAAGTGCAGTTCATTTGGGAATACCAGACATAATCTATAACCATGGCCAACCCATTACTATCCCTGAGTTGGTCTTGGCACTTCAGATAGACCCTGTTAAGTCTGGTTATGTATATAGGCTCATGCGCTTTCTGGTGCATGCTGGCTTCTTTGCTACAACCAAAACCAAGGTTGTAAAAGATGACGAAAAGGAAGAAGTAGGGTATGATCTCACACCTTCTACAAGGCTTCTCCTCAAAGACAACGTCCCAACCTTGTCTCCTTTTGTTAGGACAATGTTTCACCCGGCTATAGTTCACTCATATGAATTTTTGGGAGAATGGTTTCACAGAAATGATCTCACACCCTTTCAAACTGCATTTGGCATGGACTTTTGGGACTATTTAGGCCAAAACCAAGAGTTTAACATGCTCTTCAATGAAGCAATGATTAGTGATTCTGGGATGATGAATTTGGTGATCAAAGATTGCAAGTCTGTTTTTGAGGGATTGAATTCATTGGTTGATGTTGGGGGTGGTCAGGGAGCTGTAGCTAGGATAGTTTCTGAGTCACTGCCTAATCTGCAATGCACAGTGCTAGATCTTCCACATGTGGTTGAAAATTTGCCAGATAGCAGTAATGTGAAATTTGTTGGAGGTGACATGTTTCAGTCTATTCCTTCTGCAGATGCCATTCTTCTCAAGTTAGTCTTGCATGCTTACAGTGATGAAGAGTGCGTGAAGGTACTGAAGAAGTGCAGAGAAGCTATTTCAAACGAGGGCAAGGGAGGGAAAGTAATTATCATAGACATAGTGATTGGTGAGAAGAATGATGATAAGGATGAATTGACGGAAGCAAAGCTCTTTTTTGATCTGTTAATGATGGTTGTGGTCAGTGGAAGGGAGAGAGAAGAAAAAGAATGGAAGAAGCTCTTCTTGGAAGCTGGATTTAGTCACTACAAAATAACACCCATCTTTGGTATGAGGTCACTTATTGAAATTATGGAGTTCCATAAGGAGTACCTGGATTTGATTTTGATCCCTTGCGGGTTGTTGATCATGTTTGCTTATCACCTCTCACTGCTTTACAAATATATCAATCAGCCTCACACTACAGTCATGGGATTTGAGAACAACGACAAAAGAGTTTGGGTTGAAAGAATTATGCAGGCTGAGAAAAGGGATGTTGACACAGCCCTCACTGTGATTCAATCCAACACATCAGCTGCTACATTCTTAGCCTCCGTTTGTTTGACTCTCTGTGCTCTAATTGGAGCTTGGATTGCCAATAGTACCAATATTTTCTTCCAGAGCCAATTAATCTATGGTGACACAAGGCCAACCACCATTTCTATCAAGTACATTTGTCTACTAACTTGTTTTCTCCTTGCTTTCGCATGCTTTATTCAATCAGCAAGGCACTTTGTTCATGCAAACTATTTGATAAGCATCCCTGATAGTTTTGTCCCAGTGAGTAGTGTGGAATTAGCAGTCATAAGGGGTGGTGATTTTTGGTCACTTGGTCTTCGAGCCCTCTATTTTGCTCTTGACTTGCTGCTTTGGTTCTTTGGGCCTATTCCCATGTTTATTTGCTCAGTGGTTATGGTCATGGTCCTCCGTTATCTTGACTCTAATTCAAGGCCATTGCATATGCATCCTAATAAGTCTCAGCATAGCCACTTTCCGGTGTCAAAGAGAGGCCTTAATGTATGA 1788 0.4122 MEINQRHGAEELFQAQTHLYKYTYSFIASMCLKSAVHLGIPDIIYNHGQPITIPELVLALQIDPVKSGYVYRLMRFLVHAGFFATTKTKVVKDDEKEEVGYDLTPSTRLLLKDNVPTLSPFVRTMFHPAIVHSYEFLGEWFHRNDLTPFQTAFGMDFWDYLGQNQEFNMLFNEAMISDSGMMNLVIKDCKSVFEGLNSLVDVGGGQGAVARIVSESLPNLQCTVLDLPHVVENLPDSSNVKFVGGDMFQSIPSADAILLKLVLHAYSDEECVKVLKKCREAISNEGKGGKVIIIDIVIGEKNDDKDELTEAKLFFDLLMMVVVSGREREEKEWKKLFLEAGFSHYKITPIFGMRSLIEIMEFHKEYLDLILIPCGLLIMFAYHLSLLYKYINQPHTTVMGFENNDKRVWVERIMQAEKRDVDTALTVIQSNTSAATFLASVCLTLCALIGAWIANSTNIFFQSQLIYGDTRPTTISIKYICLLTCFLLAFACFIQSARHFVHANYLISIPDSFVPVSSVELAVIRGGDFWSLGLRALYFALDLLLWFFGPIPMFICSVVMVMVLRYLDSNSRPLHMHPNKSQHSHFPVSKRGLNV. 596
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04839 595 Pfam O-methyltransferase domain 137 343 IPR001077 GO:0008171
Seca6g04839 595 Pfam Protein of unknown function, DUF599 370 572 IPR006747 -
Seca6g04839 595 Gene3D - 2 110 IPR036388 -
Seca6g04839 595 FunFam O-methyltransferase ZRP4 112 361 - -
Seca6g04839 595 SUPERFAMILY "Winged helix" DNA-binding domain 10 114 IPR036390 -
Seca6g04839 595 Pfam Dimerisation domain 30 78 IPR012967 GO:0046983
Seca6g04839 595 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 117 358 IPR029063 -
Seca6g04839 595 PANTHER OS02G0292800 PROTEIN 362 575 - -
Seca6g04839 595 FunFam Coniferyl alcohol 9-O-methyltransferase 2 110 - -
Seca6g04839 595 Gene3D Vaccinia Virus protein VP39 112 360 IPR029063 -
Seca6g04839 595 ProSiteProfiles SAM-dependent O-methyltransferase class II-type profile. 20 361 IPR016461 GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04839 Seca-Chr6 115800874 115805547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04839 30 361 Monolignol Biosynthesis Gene Families AT5G54160 33.529 9.69e-47 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04839 K22588 - cic:CICLE_v10017559mg 562.762
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04839 6 115800874 115805547 Seca6g04839 6 115800874 115805547 ECH