Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04827 ATGCTATGCTGTCTCTTAATTTCCTTGGATTTTCTCTGTATTAAATATTTTTCTCTTGACCACAGGCGTTTTGATAGGAATCAATTAAGCGGAGGAGTGCCTTCAAACTTGAACAATCTCGGAAAACTTAGCGAGCTCTATTTATCTCACAATCAAATGGGTGGCTCTCTGCCGGATCTTACTGGAATGAATAGTCTCACCTATGTGGATCTGAGCGACAATAATTTCAATTCTTCTGATATTCCTTCATGGGTTACAAGTCTGCCAGATCTGACAACAGCGATACTGAAGGACAACAAGCTCAGTGGCACATTAAATCTTAGCAATGGCTACAGCAACAGTCTGCAACTCATTGATTTGGAGAATAATGATATAACCGATCTCAAGCCTAGAAACCAAAAATTTACTTTTGATTTGAGACTGGCTAATAACGAAATTTGTCTTGAAAATGGAGCTTCTGATGAGAGTTACTGCAAAGTGCACCAAATCATTCCCTCATATTCAACCCCACCAAATAATTGTGCAGCTCCATCTTGCAGTGACAGTCAGATTTTAAGCCCCAACTGTAAATGTGCATTTCCCTATACTGGAATTCTGTCATCCAGAGCTGTTAGTTTCTCAAACTATAGTAACTCAAGTTACTACAGACAAATTGAGCAGACTATGCTGGACACTTTTCGAAAACAAAATGTTGCTGTGGATTCAGTTTCTCTTAGTAATCCCAGGAAGAATTCAACTAATGATAATTTTCAGTTGACTCTGGATGTCTTCCCATCTCAAACTGACCGTTTCAATAGCACTGGAGTTTTAACCATTTCTTTTCTGCTTAGCAACCAAATTTACAAACCCCCAGCATTTTTCACCCCTTACGTCTTCAATGGTCTTAGTTATGAACACTTTGGAGGAGAACCTAAAGGATCAAAGTCAAAAAATACAGGGGTTATAGTTGGTGCAGTACTTGCTGTAGTGGTGTTTCTTGTACTAGCACTCCTTGCAGGGATATATGCCATCCGCCAAAAAAGAAGAGCAAAAAGATCTGCAGAGTTGAACCCTTTTGTAAATTGGGAACAGAACAAGAATAGTGGCACTGCTCCTCAGTTGAAAGGAGCACGATGGTTTTCTTTTGAAGAGCTAAAAAAATACACCAGTAACTTCTCAGAAGCCAATACTATTGGATCTGGCGGCTATGGAAAGGTTTACCAAGGTGTTCTTCCCTCTGGAGAGTTGGTTGCCATCAAACGGGCTGCACAAGAATCTATGCAGGGTGCTGTTGAGTTTAAAACTGAGATTGAACTTCTATCAAGGGTCCATCATAAGAATCTTGTTAGTCTTGTGGGATTCTGTTTTGAGAAGGGTGAACAAATGCTGGTGTATGAGTACATTCCAAATGGCACTTTAATGGATAGTCTTTCAGGAAAGTCTGGGATATGGATGGATTGGATAAGGAGGCTGAAAGTAACACTGGGTGCTGCCAGGGGTCTGGCCTATCTACATGAACTTGCTAACCCACCAATTATACACAGGGACATCAAATCAGGCAATATCCTACTTGATAATCACCTCAATGCAAAAGTTGCCGATTTTGGTCTCTCCAAACTTCTTGTTGATAGTGACAGGGGCCATGTCACTACTCAAGTCAAAGGAACAATGGGCTACTTGGATCCTGAATATTACATGACCCAACAGTTGACTGAAAAGAGTGATGTATACAGCTTTGGAGTGTTAATGCTGGAACTAGTGACAGCAAGAAGGCCAATAGAACAAGGGAAGTATATTGTAAGAGAGGTAATGAGGGTAATGGATACATCAAAAGATTTATACAACCTTCATTCCATTATAGATCCAACTATAATGAAAGTGACAAGCCCAAAAGGTTTAGAAAGGTTTGTGGGACTGGCAATGAGGTGTGTCAAAGAATATGCAGCTGAGAGGCCTACAATGGCTGAGGTTGTAAAAGAGATTGAAAACATAATCGAGCTTGTTGGAGTGAACCCCAATGCTGAGTCAGCTTCAACATCAGAAACTTATGAGGAAGCAACTGGGGGGAATGTCCAACATCCTTATGTCAATAATGATTTTGAATATAGTGCAATGTTTCCATCAGCAAAGGTAGAACCTCAATGA 2124 0.403 MLCCLLISLDFLCIKYFSLDHRRFDRNQLSGGVPSNLNNLGKLSELYLSHNQMGGSLPDLTGMNSLTYVDLSDNNFNSSDIPSWVTSLPDLTTAILKDNKLSGTLNLSNGYSNSLQLIDLENNDITDLKPRNQKFTFDLRLANNEICLENGASDESYCKVHQIIPSYSTPPNNCAAPSCSDSQILSPNCKCAFPYTGILSSRAVSFSNYSNSSYYRQIEQTMLDTFRKQNVAVDSVSLSNPRKNSTNDNFQLTLDVFPSQTDRFNSTGVLTISFLLSNQIYKPPAFFTPYVFNGLSYEHFGGEPKGSKSKNTGVIVGAVLAVVVFLVLALLAGIYAIRQKRRAKRSAELNPFVNWEQNKNSGTAPQLKGARWFSFEELKKYTSNFSEANTIGSGGYGKVYQGVLPSGELVAIKRAAQESMQGAVEFKTEIELLSRVHHKNLVSLVGFCFEKGEQMLVYEYIPNGTLMDSLSGKSGIWMDWIRRLKVTLGAARGLAYLHELANPPIIHRDIKSGNILLDNHLNAKVADFGLSKLLVDSDRGHVTTQVKGTMGYLDPEYYMTQQLTEKSDVYSFGVLMLELVTARRPIEQGKYIVREVMRVMDTSKDLYNLHSIIDPTIMKVTSPKGLERFVGLAMRCVKEYAAERPTMAEVVKEIENIIELVGVNPNAESASTSETYEEATGGNVQHPYVNNDFEYSAMFPSAKVEPQ. 708
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04827 707 Pfam Protein kinase domain 386 652 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04827 707 ProSitePatterns Protein kinases ATP-binding region signature. 391 413 IPR017441 GO:0005524
Seca6g04827 707 SMART serkin_6 385 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04827 707 FunFam LRR receptor-like serine/threonine-protein kinase HSL2 461 671 - -
Seca6g04827 707 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 671 - -
Seca6g04827 707 Gene3D Phosphorylase Kinase; domain 1 355 460 - -
Seca6g04827 707 SUPERFAMILY Protein kinase-like (PK-like) 364 653 IPR011009 -
Seca6g04827 707 ProSiteProfiles Protein kinase domain profile. 385 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04827 707 SUPERFAMILY L domain-like 24 146 - -
Seca6g04827 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 505 517 IPR008271 GO:0004672|GO:0006468
Seca6g04827 707 CDD STKc_IRAK 391 657 - -
Seca6g04827 707 Gene3D Transferase(Phosphotransferase) domain 1 461 676 - -
Seca6g04827 707 FunFam Leucine-rich repeat protein kinase family protein 353 460 - -
Seca6g04827 707 Gene3D Ribonuclease Inhibitor 13 170 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04827 Seca-Chr6 115739694 115744248 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04827 23 707 Receptor kinase-like Gene Family AT5G49760 53.586 0.0 694
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VIII-1 Seca6g04827 Pkinase 2.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04827 - - gmx:100786172 1077