Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04824 ATGGCTTCTAATAGACACTGGCCAAGCATGTTCAAGTCTAAGCCCTGCAACCCTCACCACCAATGGCAGCATGACATCAACTCCTCTCTTATGTCATCTGGTTGCCATAGAAGTCCTTACACTTCAGCAGCAGGTTGTGAGGAGAGAAGTCCAGAGCCAAAGCCAAGGTGGAACCCAAAACCAGAACAAATTCGCATACTGGAAGCAATATTCAACTCTGGAATGGTGAATCCTCCAAGAGATGAAATAAGGAAGATCAGAGCACAGTTGCAAGAGTATGGCCAAGTTGGTGATGCTAATGTCTTCTACTGGTTCCAGAACCGCAAATCAAGGAGCAAGCACAAGCTTCGCCATCTCCAGAACTCAAAGAACGTGCAGAACTCTGAACCCCCACAAAACCCTCCAATCTCTCTCCCTCTCACACAAATCACTGCACCTAATTCATCCTCATCTTCTTCCTCTGAGATATCTTCCCCCAAAGAACTAATACCCACCAAGGTGTTTTCCATTCATTCCCCCACCGCCTCTGTCAACCAAACCTATTTTCAGAATGACACCACTACTCTTCTGCCGCCACCACCACCACCACCTGAGACTTTCTTCTTTCCAGTGCAAGGAGTGGTGCCAAATACGGTAACATCACAAGGGTTTGGCTTTTCTGAACTTTCCAATGTGGTTCAAGCTCAATCTCATAACTCTGGTCCTTGCACTAGTCTTTTGCTTAGTGAGATTATGATCCATAATGGACATGGAGCCTCAAAGAAAGACCAAGATGAAGACAAGTCTGTGAAAATAATGCACCAAACTCCACAGCTTAATTTCTGTGTCACTCCCACAAGTACTGTACTTGTACCACCCACCCCTTCCACCACCATTACTGTTCCATCCCCCATCATTTCTCAAGTTCAAGGCATTGGAGATCCAGGTGTTCCGGCGAGATCAACGGTTTTCATTAACGATGTGGCATTCGAGGTAGCGGTGGGACCTTTCAACGTGCGTGAGGCCTTTGGGGAAGATGCTGTGCTTATCCATGCCACTGGTCAGCCTGTTCTTACAAACCAATGGGGACTCACCCTCCAATCACTCCACCATGGTGCATCTTATTATCTGATATAG 1116 0.4677 MASNRHWPSMFKSKPCNPHHQWQHDINSSLMSSGCHRSPYTSAAGCEERSPEPKPRWNPKPEQIRILEAIFNSGMVNPPRDEIRKIRAQLQEYGQVGDANVFYWFQNRKSRSKHKLRHLQNSKNVQNSEPPQNPPISLPLTQITAPNSSSSSSSEISSPKELIPTKVFSIHSPTASVNQTYFQNDTTTLLPPPPPPPETFFFPVQGVVPNTVTSQGFGFSELSNVVQAQSHNSGPCTSLLLSEIMIHNGHGASKKDQDEDKSVKIMHQTPQLNFCVTPTSTVLVPPTPSTTITVPSPIISQVQGIGDPGVPARSTVFINDVAFEVAVGPFNVREAFGEDAVLIHATGQPVLTNQWGLTLQSLHHGASYYLI. 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04824 371 MobiDBLite consensus disorder prediction 138 158 - -
Seca6g04824 371 SMART HOX_1 52 119 IPR001356 GO:0003677
Seca6g04824 371 Pfam Homeodomain 54 114 IPR001356 GO:0003677
Seca6g04824 371 ProSiteProfiles 'Homeobox' domain profile. 50 115 IPR001356 GO:0003677
Seca6g04824 371 PANTHER WUSCHEL-RELATED HOMEOBOX 9 2 371 IPR044557 GO:0003700|GO:0050793
Seca6g04824 371 MobiDBLite consensus disorder prediction 123 158 - -
Seca6g04824 371 CDD homeodomain 53 115 IPR001356 GO:0003677
Seca6g04824 371 MobiDBLite consensus disorder prediction 37 61 - -
Seca6g04824 371 Gene3D - 54 120 - -
Seca6g04824 371 FunFam WUSCHEL-related homeobox 11 54 121 - -
Seca6g04824 371 SUPERFAMILY Homeodomain-like 50 118 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04824 Seca-Chr6 115716446 115719620 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04824 2 371 Wox Gene Family AT2G33880 47.912 8.89e-91 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Seca6g04824 Homeodomain 1.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04824 - - aprc:113852083 539.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04824 6 115716446 115719620 Seca6g04824 6 115716446 115719620 ECH