Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04822 ATGGTTTTATTTTCCCAATCCCAAACAGAGTTACCCTTGAATGAGGATGATTCACAGGACATGGTCATCTACCAAGTTCTAAACGAGGCAAATGCTCTGAGCAACACATTTCTACCACAGAGGAACCAAACCCTCAGTGGCTTAGAAGCCACAAAGACCATCACGAAGAAGCACTACAGAGGGGTGAGGCGTCGTCCCTGGGGGAAATACGCAGCGGAGATTCGTGACTCGACACGTCATGGAGCCAGGTTATGGCTTGGCACATTCCAAACAGCAGAAGAAGCTGCCATGGCATATGATAGAGCTGCTTTCAGGATGAGGGGTGCTAAAGCTTTGCTCAATTTCCCAGCTGAAGTTGTTGCTGCTGCTTCCATGCAGATGGAGGACTTGTCTTCTAAGCATGATTTGAATACTAATCAGGATTCTGATTCAAGTGCTAGCAGCTCTTGCACCACTTCCACTTCCACTTCCACTTCCAATTGGGTAAATAGGTCTCAGTTTGAAAGCACAAGTAGCCCGGGTAATTAG 528 0.4716 MVLFSQSQTELPLNEDDSQDMVIYQVLNEANALSNTFLPQRNQTLSGLEATKTITKKHYRGVRRRPWGKYAAEIRDSTRHGARLWLGTFQTAEEAAMAYDRAAFRMRGAKALLNFPAEVVAAASMQMEDLSSKHDLNTNQDSDSSASSSCTTSTSTSTSNWVNRSQFESTSSPGN. 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04822 175 PRINTS Ethylene responsive element binding protein signature 59 70 IPR001471 GO:0003700|GO:0006355
Seca6g04822 175 PRINTS Ethylene responsive element binding protein signature 82 98 IPR001471 GO:0003700|GO:0006355
Seca6g04822 175 Gene3D AP2/ERF domain 57 118 IPR036955 GO:0003700|GO:0006355
Seca6g04822 175 MobiDBLite consensus disorder prediction 134 175 - -
Seca6g04822 175 CDD AP2 57 117 IPR001471 GO:0003700|GO:0006355
Seca6g04822 175 ProSiteProfiles AP2/ERF domain profile. 58 116 IPR001471 GO:0003700|GO:0006355
Seca6g04822 175 SUPERFAMILY DNA-binding domain 58 118 IPR016177 GO:0003677
Seca6g04822 175 SMART rav1_2 58 122 IPR001471 GO:0003700|GO:0006355
Seca6g04822 175 PANTHER DNA-BINDING DOMAIN 49 156 IPR044808 GO:0003700|GO:0009873
Seca6g04822 175 FunFam Ethylene-responsive transcription factor 2 57 118 - -
Seca6g04822 175 Pfam AP2 domain 58 108 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04822 Seca-Chr6 115689469 115689996 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04822 4 119 AP2-EREBP Transcription Factor Family AT4G17500 47.586 4.56e-41 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g04822 AP2 6.6e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04822 K13433 - gmx:100811533 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04822 6 115689469 115689996 Seca6g04822 6 115689469 115689996 ECH