Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04821 ATGGATATTCATAATAATCATCATGCAACTTCTGAAGGGATTCTTGAGAATGTATGGGCTAAAATTATCAGCACTGACAGAGCAGGTGATGCAGCAGAACCTTCTAACTCCTGGGAAGAACTGCCTAATCTTGATGGAAGAGATGGGTCTATGGAAATTCTGCAAAGACTTCCAAGTTTAGGGAGATGGATATCAATGGGAGCTGATTTCTGGGAAGAGGTTTTAAATGGTATTCTACCTACTACAAGCAATACAGAAGATTCTGCTGACAATAAAAAATTGGAAATTGGAAGTGCTAATGAATCCAATATAAAGGAAGAAGATGCAGCTGTGAGAAGAGAGAAGGCAGTAGCAAGACACTACAGGGGAGTAAGAAGAAGGCCATGGGGTAAATATGCAGCAGAGATTAGAGACTCATCCAAGAAAGGTGCTAGAATTTGGCTTGGCACATTTGATACAGCTGAAGATGCAGCTTTAGCTTATGACAAGGCTGCTTTGAGAATTAGAGGTCCAAAGGCATACCTCAATTTCCCACTTGAGAGAGTCACAAACGCTTTAGGATGTGACCAGAAACAGAAAGGGATTGATCTTACATCCTGTGCTTGTACAACTTGCACACACATTGGGAACACAGGAAATTTCTTCGATTCCCGGAAGAGAGGATCAAGGGATGGGGAAGAATTTGTTGATTTGATGAACGAACAACCTGCAACAAAAAAGGTGGCAAGTTTGGAAAACATGCTAGAAAATGAACTAGATGTTTTTGTATTTCAGGACCTAGGGAGTGATTACTTGGACAGTTTGCTGTCTTCTTTTTGA 819 0.4078 MDIHNNHHATSEGILENVWAKIISTDRAGDAAEPSNSWEELPNLDGRDGSMEILQRLPSLGRWISMGADFWEEVLNGILPTTSNTEDSADNKKLEIGSANESNIKEEDAAVRREKAVARHYRGVRRRPWGKYAAEIRDSSKKGARIWLGTFDTAEDAALAYDKAALRIRGPKAYLNFPLERVTNALGCDQKQKGIDLTSCACTTCTHIGNTGNFFDSRKRGSRDGEEFVDLMNEQPATKKVASLENMLENELDVFVFQDLGSDYLDSLLSSF. 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04821 272 SUPERFAMILY DNA-binding domain 120 179 IPR016177 GO:0003677
Seca6g04821 272 ProSiteProfiles AP2/ERF domain profile. 120 178 IPR001471 GO:0003700|GO:0006355
Seca6g04821 272 CDD AP2 120 178 IPR001471 GO:0003700|GO:0006355
Seca6g04821 272 FunFam Ethylene-responsive transcription factor 2 119 180 - -
Seca6g04821 272 Pfam AP2 domain 120 170 IPR001471 GO:0003700|GO:0006355
Seca6g04821 272 PANTHER DNA-BINDING DOMAIN 93 266 IPR044808 GO:0003700|GO:0009873
Seca6g04821 272 PRINTS Ethylene responsive element binding protein signature 121 132 IPR001471 GO:0003700|GO:0006355
Seca6g04821 272 PRINTS Ethylene responsive element binding protein signature 144 160 IPR001471 GO:0003700|GO:0006355
Seca6g04821 272 Gene3D AP2/ERF domain 119 180 IPR036955 GO:0003700|GO:0006355
Seca6g04821 272 SMART rav1_2 120 184 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04821 Seca-Chr6 115684972 115685790 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04821 14 272 AP2-EREBP Transcription Factor Family AT4G18450 36.859 1.38e-44 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca6g04821 AP2 3.1e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04821 6 115684972 115685790 Seca6g04821 6 115684972 115685790 ECH