Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04816 ATGAATTTCTATGTCCAAACTTTAAACGCAGTTCCAAACTTTTTGCTTAGGCTTCTCCTATTCTATTGCCTTATAGGAGCCCAGGCAGCTCAAAATACAAGTGTTGGTGTGGTCATTGATATCAATTCTGAAACGGGGAAACAACAGAGAAGAGCCATGGAGATTGCAGCTCAAAATTTCAATAATTATTCAAACACTCAAAACATAGTCCTCTTCTTCCGTGACTCTGGTAGAAACCCATTGCAAGCAGCTTCAGCTGCTGAAGAATTAATTACTAAGGAGAAAGTTAAAGTCATTATTGGCATGGAGACATGGCAGGAAGCAGCTCTTGTTGCTGACCTTGGAGCCAAAGCTCAAGTACCAATTATTTCATTTTCTGCTCCCCCAGTTATAGCTATATATGAAGACAACCCTTATAGTGGTGATTCTGGAATGTTAAGCCTCTTTTCTGAGGCTCTCCAAAAGGTTAACTCCCAGATTGAGTACCGATTAGTTCTTCCATCGTTCACTTCTTTATCTGATCCAAAAGGGGTTGTTCTTGATGAATTGCTGAAGTTGTTGCCACTTAAATCTCGTGTTTTTATTGTACTTCAAGCATCATTACCTATGAAAATTGGATTCTTGGAGAAAGACTCAGCATGGATCATCAATGAGGGGATTACAAGTATGTTGGACTCTGTCAATAAATCTGTTTTATCCTCTATGCAAGGTACTTTGGGAATCAAAACCTACTATTCTACAAGTTCTAGTGCTTATACTCAGTTGCAGGAAAACTTCAAAGCTAAGCATACAGAAACAGTTGGGTCTAAACCAGGATCAGATGCCCTACTAGCTTATGATAGCATCACAGTTGTCACAAAGGCCTTGGAGAAAATGAATACCAATTCTAGTAGCTCAAAGGTGTTCTTGGAGGAAATGTTGTCAGGAGGCCTAAGTTCTGTGGATCCTCATCCTCCTAATGGATGGAAAGTACCTACCAATGAAAACCCTTTAAAAGTTGCAATTCCTATGAACCCTGCTTTTGATAGTTTTTTAAAGGAAGACTCTCCGAACACTGAGTCGGGCTTATTACTCATATTTCCAGTAGAGACTGAAGGGTCAGCATGGTTGTTTACGAAACCATTCAGCTGGGAAATGTGGATTGCAACTATTGCCATCCTCATCTACACAACGTTCATCATTTGGTTCCTGGAGCATCACCTCAACCCAGATTTTGGGCATGGATCATTGAAAAATCAGATCAGCACCACACTTTGGTTTGCATTTAATTCTCTATATTTTGCTCATAGTAACGGAGAACATAAACAGAAACTCTGCACAGTAGTTGGCGTATGGTTATTTCTTGTGTTTGTTCTAACCTCAAGCTACACTGCAAGCCTTTCTTCATTGCTTACTGTCAAACGGTTGAAGTCTGGAAGAGACATCGAATGGCTTAAACAAAACAGCCTATCAGTTGGTTGTGATAACAACAGTGCCTTTGTAAAGAACTACTTGGTCAACGTAGTAGATGTTGATGGAGAACATGACATTGTGGATAAATTCAAGAACAAAAGAATCTCTGCTCTCTTTCTTGAGACCCCATATGAGAAGGTTTTCTTGAACAAGTACTGCAATGATTACACTGCAATCACAGCTGCCTATAAATTTGGAGGAATGGGATTTTCAAACAACTCAACATCTCCAGAGACTGATAGCCTGACTCTAGACAAGTTTTGGGGTCTATATATCATATGTGCTGCCACTTCCACCATCTGCTTATTGCGAGCCTTATGGAAGAATTACCTCCATAACCGTAACCATTGCCATCATGAAGAGGAAGCTCAAGTTCAAGGGAATGTAACCGCTGATGATAATAGTGTTTGGAAGAAGCCATTGCCATTGAGAATCAGCACAGGCTTTTACAATGGGAATCCCAAAACTATAAATAGAGCTGCAACTTTTGGTGGAAGTAGAACACAGAGTTTACGTCGTCGAAATTCCTCAACGTGGCCGAGTATAAGCTTTTCTGATGAACTCAGTCATCAACAACATCGCTCCAAATCAATTGTCATAGAAATGATTAACCGAGATGAGGCTACCACTGCAAACAACAAAGTTATATCTATTGGGGCCATCATTGATGTTAATTCTCGTATTGGGAAAGAACAGCAAGTAGCCATGGACATTGCAGCTCGAAGTTACAATAGCACTTCAAAGAATTACAAGTTGGCTCTCCATTTTCGGAACTCCACTAAGGATCCCCTCAGAGCCATCACTCTTGCTGGAGAGATGATTAACATGCAAAAGGTTCAAGTGATTATAGGGATGCACACATGGCCAGAAGCAGCTCTAGTGGCTGAAATAGGAAGCCAAACTCAAGTTCCTACAATATCCTTTGCGGAACCTACAGTTACCCCGCCATTGATGACAATTCGATGGCCTTTTTTGGTGAGACTGACTAACAATGGAACGGCATATATAAAATGCATTGCAGATATAGTGCAAGCTTTTAGATGGCAGAGAGTAGTGGCCATCTATGAAGATGATGGGTATGGTGGAGATTATGGGATGTTAGCACTGCTATCGGAGACCCTCCAAGATGTGGGTTCAATGATTGAGTACCGCCATGATCCTGGAGAGCTAGTACATAAAGAGCTGCTTAAGTTAATGCAAACACAGTCTCGAGTGTTCATTGTGCTGCAATCATCATTAGAAATGGTGATTCATTTGTTCAAAGAAGCTTCAAAAAAGGGACTCATGAATAGAGAATCTGTTTGGATAATCCCAGAGAGCATAAGAGCTTTAGGAATCAAGACCTACTACTCCGAAACGAGTAGCCAGTATCAAAATTTTGAGGCTCAGTTCCGGAGAACATTTTGGTCAAAGAATCCAGAGGAAGATAACCGCTACCCAGGATTTTATGCTCTGCAAGCATATGATGCCATTAAAATTGTTGCTCAAGCAGTAGACAGAATGGCAAGTAGAAACAATACAAATCCAAAGACTTTACTGATGAGAGAAATTCAGTCTAGCAGTTTCCTTGTAAACGTGGTTGGGAAGAGTTACCAGGAATTATGCTTTTGGACTCAAAAACATGGTTTCACCACAAGCCTCCCTACAGGACAAGGTGGAAAAAATGTTGCTGGAAATACAAAATGTTTCAAGGGTGTGCGTTGGCCTGGGGATTTGCACCGGGATCCAAAGGGCTGGAACATGCCTACTAAACAAAATCCATTGCAAATAGCAGTCCGAAGCAGAACCTCATTTTCCAAGTTTGTCAAGGTTGAGTATGGCCAGAATCAAAATCCTGTAAAATACACTGGATTCTGCATTGAAATTTTTGAGCATGTGGTCAAACTTTTGGGGTACGATCTGCCGTTTCAGTATCACCCCATCGATGGAACCTATAATGACTTGGTTCAGCTTGTCTATAACAAGACTTATGATGCTGTTGTTGGGGACATGACCATACTAGAGGAAAGATTGCAGTATGTGGATTTTACAGTGCCATATGCAGAATCAGGATTGTCAATGATAGTTCCAGCAAAGTCTGAAGAGTCAGCATGGATGTTTATGAAGCCCTTTACCTGGGAATTGTGGATGGTTACAGGTGCCATCTTGTTTTACACAATGTTAGTAGTTTGGTATCTTGAGAGAGAACCCAATCCAGAGGGAAAAAATGTACAGCAACTTAACTCGAGTGGTGATGGTCTCCTGGCTCTTTCTAGTTTTGATTCTTAA 3720 0.4086 MNFYVQTLNAVPNFLLRLLLFYCLIGAQAAQNTSVGVVIDINSETGKQQRRAMEIAAQNFNNYSNTQNIVLFFRDSGRNPLQAASAAEELITKEKVKVIIGMETWQEAALVADLGAKAQVPIISFSAPPVIAIYEDNPYSGDSGMLSLFSEALQKVNSQIEYRLVLPSFTSLSDPKGVVLDELLKLLPLKSRVFIVLQASLPMKIGFLEKDSAWIINEGITSMLDSVNKSVLSSMQGTLGIKTYYSTSSSAYTQLQENFKAKHTETVGSKPGSDALLAYDSITVVTKALEKMNTNSSSSKVFLEEMLSGGLSSVDPHPPNGWKVPTNENPLKVAIPMNPAFDSFLKEDSPNTESGLLLIFPVETEGSAWLFTKPFSWEMWIATIAILIYTTFIIWFLEHHLNPDFGHGSLKNQISTTLWFAFNSLYFAHSNGEHKQKLCTVVGVWLFLVFVLTSSYTASLSSLLTVKRLKSGRDIEWLKQNSLSVGCDNNSAFVKNYLVNVVDVDGEHDIVDKFKNKRISALFLETPYEKVFLNKYCNDYTAITAAYKFGGMGFSNNSTSPETDSLTLDKFWGLYIICAATSTICLLRALWKNYLHNRNHCHHEEEAQVQGNVTADDNSVWKKPLPLRISTGFYNGNPKTINRAATFGGSRTQSLRRRNSSTWPSISFSDELSHQQHRSKSIVIEMINRDEATTANNKVISIGAIIDVNSRIGKEQQVAMDIAARSYNSTSKNYKLALHFRNSTKDPLRAITLAGEMINMQKVQVIIGMHTWPEAALVAEIGSQTQVPTISFAEPTVTPPLMTIRWPFLVRLTNNGTAYIKCIADIVQAFRWQRVVAIYEDDGYGGDYGMLALLSETLQDVGSMIEYRHDPGELVHKELLKLMQTQSRVFIVLQSSLEMVIHLFKEASKKGLMNRESVWIIPESIRALGIKTYYSETSSQYQNFEAQFRRTFWSKNPEEDNRYPGFYALQAYDAIKIVAQAVDRMASRNNTNPKTLLMREIQSSSFLVNVVGKSYQELCFWTQKHGFTTSLPTGQGGKNVAGNTKCFKGVRWPGDLHRDPKGWNMPTKQNPLQIAVRSRTSFSKFVKVEYGQNQNPVKYTGFCIEIFEHVVKLLGYDLPFQYHPIDGTYNDLVQLVYNKTYDAVVGDMTILEERLQYVDFTVPYAESGLSMIVPAKSEESAWMFMKPFTWELWMVTGAILFYTMLVVWYLEREPNPEGKNVQQLNSSGDGLLALSSFDS. 1240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04816 1239 SMART GluR_14 1073 1236 IPR001320 GO:0015276|GO:0016020
Seca6g04816 1239 FunFam Glutamate receptor 819 962 - -
Seca6g04816 1239 Pfam Bacterial extracellular solute-binding proteins, family 3 1097 1177 IPR001638 -
Seca6g04816 1239 SUPERFAMILY Periplasmic binding protein-like I 25 298 IPR028082 -
Seca6g04816 1239 FunFam Glutamate receptor 368 507 - -
Seca6g04816 1239 Gene3D - 1181 1232 - -
Seca6g04816 1239 Gene3D - 365 500 - -
Seca6g04816 1239 CDD PBP1_GABAb_receptor_plant 701 1031 IPR044440 -
Seca6g04816 1239 Gene3D - 821 967 - -
Seca6g04816 1239 Gene3D - 25 127 - -
Seca6g04816 1239 Gene3D - 128 269 - -
Seca6g04816 1239 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 34 307 IPR015683 -
Seca6g04816 1239 Pfam Periplasmic binding protein 43 143 IPR028081 -
Seca6g04816 1239 Pfam Ligand-gated ion channel 376 580 IPR001320 GO:0015276|GO:0016020
Seca6g04816 1239 Gene3D - 1070 1180 - -
Seca6g04816 1239 Pfam Receptor family ligand binding region 717 1006 IPR001828 -
Seca6g04816 1239 FunFam Glutamate receptor 1071 1182 - -
Seca6g04816 1239 Gene3D - 694 820 - -
Seca6g04816 1239 SUPERFAMILY Periplasmic binding protein-like I 695 1062 IPR028082 -
Seca6g04816 1239 SUPERFAMILY Periplasmic binding protein-like II 1052 1235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04816 Seca-Chr6 115636722 115650944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04816 350 600 Ion Channels AT2G29120 29.316 2.00e-29 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04816 - - gmx:100818619 840.106
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04816 6 115636722 115650944 Seca6g04816 6 115636722 115650944 ECH