Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04814 ATGGGGTCTGAAGACAAAGATGGTGAACAACAGTCACTTGGTATAGGCCTTAAGGTTATGCTGGCTGCAGCTTTCTCTTTATTTGGTATAGTCTTGTTCACTATATTCCTCCTTTTTTGTGCAAAATATCTCATAAGGCGCCAACAGAGAAGACGTCAAATTCACCTTCTTAATCAGATCAACATTCAAATTGCACCAATTGATGTGAGTTTAGTGGAGCCACCCAATTCTGGTCTTCACCCTTTGATCATAGCCTCGCTGCCTAAACTATTGTACAACCAAACGGACCACTTCAGACAATGTGAAGAAGGAGCTACAGAGTGCTCTGTTTGCTTAGCCACTATTCTGGAAGATGCAACTATTAGGTTGCTACCAAATTGTAAGCACATTTTTCATGTTGATTGTGTTGATAAATGGTTTAGTTCCAACACCACATGCCCAATTTGCCGCACCGTGGCTGAACCCAGGCTCCAGGTCCAACCCACAGCACCACCTGTAGACGATGAGCCACAAGATGGTAGTGAATTGGAGAAGGTGGGCTGTTCAGGCTTAAGAAAAGGATCTTTTCATAGAATGATGAATCAATTTCTTGGCACTGGTACCCCTGCTTCTTCAGGATCATTGCCAATTGGACTGCACAATCATCGAGAGCCCCCTTCAAACCAAAGTTCATATTACAACTACACATCTAGGGCCCCAGAGGAACATAAGATGGTTGGCATGAAGCGGTCTCACCCTTCATCCTTGGATAATTCTCTTATTCCACCATCCAACTTTCCAGTTCTTCCAAGTTTCTCTAACTACAATAGACCACACCCATCATCTACAAATAATGAAAGCCACGGTGTAGGTAGTTTCAGTGCCACCAACGAGTGCTACAGGGATGCCAAATGGGGTAGCACTTTGGAGCTCAGCAGTAGAAGGTTCAATTCTGACATTGTGGTGCCTCATGCAAATTTCCCACCTCATGCTGCTCCTGAAGTTCCTCCACCTCCTATGCATTTGTTTCAAGGTGTTCTTTCCAAAGGGAATGTGCTTCCTTGCCAAGTAACTGAAGATAAAATGGAGGACTCACACCAACGTTTAGAATCACGTGGACCAGATCGTAGACCCTTCTATAACTTCTTAGAAGTGAAGGATCCAGAAGGGGTGACAGATACAACCAATGGCCAAAATCATAGGGGACGTGAAGCAGGAAGGGGTGGCATTGATCTTAGCTTGAAGCTCTGA 1230 0.4447 MGSEDKDGEQQSLGIGLKVMLAAAFSLFGIVLFTIFLLFCAKYLIRRQQRRRQIHLLNQINIQIAPIDVSLVEPPNSGLHPLIIASLPKLLYNQTDHFRQCEEGATECSVCLATILEDATIRLLPNCKHIFHVDCVDKWFSSNTTCPICRTVAEPRLQVQPTAPPVDDEPQDGSELEKVGCSGLRKGSFHRMMNQFLGTGTPASSGSLPIGLHNHREPPSNQSSYYNYTSRAPEEHKMVGMKRSHPSSLDNSLIPPSNFPVLPSFSNYNRPHPSSTNNESHGVGSFSATNECYRDAKWGSTLELSSRRFNSDIVVPHANFPPHAAPEVPPPPMHLFQGVLSKGNVLPCQVTEDKMEDSHQRLESRGPDRRPFYNFLEVKDPEGVTDTTNGQNHRGREAGRGGIDLSLKL. 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04814 409 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 21 163 IPR045899 -
Seca6g04814 409 SMART ring_2 108 149 IPR001841 -
Seca6g04814 409 MobiDBLite consensus disorder prediction 379 405 - -
Seca6g04814 409 CDD RING-H2_EL5-like 107 150 - -
Seca6g04814 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 74 155 IPR013083 -
Seca6g04814 409 ProSiteProfiles Zinc finger RING-type profile. 108 150 IPR001841 -
Seca6g04814 409 SUPERFAMILY RING/U-box 87 161 - -
Seca6g04814 409 Pfam Ring finger domain 107 150 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04814 Seca-Chr6 115620366 115623482 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04814 1 171 C3H Transcription Factor Family AT2G42360 38.919 3.46e-31 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04814 - K19038 ccaj:114915403 284.648