Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04809 ATGACAATGATCAAAAGCACAGAGCGCACTCTCATCTTCCCTTCTCACCCTCCCTTCCTTCACGACCACTCCCTTCCTCTCTCCCACCTCGACACCGATCGCAACCTCCACCTCACCTTCCGCTACGTCCGCGCTTACGTCGCCACCGCCACAACCTCCCTCCAAGATGATCCCTTCCACGTCATCTCTTCCTCCCTCTCCCAAGCCCTCCTTCACTACTACCCACTCGCCGGCACCCTTCGCCACCGCCAAGACCAACACCGCCGCCGCGAATTATGGTGCGCCGCCGGCCAAGGCGTCCCTCTCATCCGTGCCACCGTCGACTTCACCCTCGATTCCGTGAATTACCTCGACGACCCTGCCTCCCCTTTCGTCGAACAGCTTGTGCCCGACCCGGAACCCGAAGAGGGAATGGAGCACCCGTGCATTCTTCAGCTGACGGTGTTCAAGTGCGGCGGGTTCACTCTCGGGGCGGCCATGAACCACGCCCTGTGCGACGGTCTTGGAGGGACTCTGTTCTTTAACGCGGTGGCTGAGTTGGCTCGCGGGTCGACCCGAATAACCGTGGAGCCGGTGTGGGACCGTGAGAGGTTGTTGGGTCCCAGAGACCCGCCCCGAGTGGATTCACCTTTGATAAGGGAGTTTTTGCGTTTGGATAAGGGGTATTTGCCTTACAATGAGGACATTGGTGTGGTTGTGAGAGAGTGCTTTCATGTGAAGGATGAGTGCTTGGACAAGTTCAAGAGGTCCTTGTTTGACCAATCTGGGTTGAACTTCACCACTTTTGAGGCTCTCGGTGCCTACATTTGGAGGTCCAAGGTGAGGGGCTCAGGAGTGCAGGGTAACGAGAAGGTTAAGTTTGCATATTCAATTAATATAAGGAGACTAGTGAAGCCAGCACTACCTGCTGGCTATTGGGGTAATGGTTGTGTTCCAATGTATGTGCAGCTCAGTGCCAAAGATTTGATAGAGCAACCCATTTGGGAAACAGCAGAGCTAATAAAAAAGAGTAAAAGTAATGTTACTGATGAGTATGTTCACTCCTTCATCGATTATCAAGAGCTGCATTTTGCTGATGGGATCACAGCAGGTAAAAGGGTGAGTGGGTTCACAGATTGGAGACACTTAGGCCATTCAACTGTGGACTTTGGGTGGGGAGGCCCAGTTACTGTTTTGCCACTTGGAAGGAACTTGCTTGGGAGTGTTGAGCCTTGCTTCTTTTTGCCTTATTCAACAGCCACTGCAGGGAAGAAGGAAGGGTTCAAGGTTTTGGTGACCTTGGCAGAGGCTGCGTTGCCTGCTTTCAGAGAAGATATGCAAGTGTTTTGCCAGTAG 1335 0.5318 MTMIKSTERTLIFPSHPPFLHDHSLPLSHLDTDRNLHLTFRYVRAYVATATTSLQDDPFHVISSSLSQALLHYYPLAGTLRHRQDQHRRRELWCAAGQGVPLIRATVDFTLDSVNYLDDPASPFVEQLVPDPEPEEGMEHPCILQLTVFKCGGFTLGAAMNHALCDGLGGTLFFNAVAELARGSTRITVEPVWDRERLLGPRDPPRVDSPLIREFLRLDKGYLPYNEDIGVVVRECFHVKDECLDKFKRSLFDQSGLNFTTFEALGAYIWRSKVRGSGVQGNEKVKFAYSINIRRLVKPALPAGYWGNGCVPMYVQLSAKDLIEQPIWETAELIKKSKSNVTDEYVHSFIDYQELHFADGITAGKRVSGFTDWRHLGHSTVDFGWGGPVTVLPLGRNLLGSVEPCFFLPYSTATAGKKEGFKVLVTLAEAALPAFREDMQVFCQ. 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04809 444 Gene3D - 229 439 IPR023213 -
Seca6g04809 444 Gene3D - 1 214 IPR023213 -
Seca6g04809 444 Pfam Transferase family 3 440 - -
Seca6g04809 444 PANTHER ACYL TRANSFERASE 4 3 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04809 Seca-Chr6 115586371 115587898 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04809 57 395 Monolignol Biosynthesis Gene Families AT5G48930 29.692 7.77e-37 138
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04809 - - gmx:100817021 738.799
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04809 6 115586371 115587898 Seca6g04809 6 115586371 115587898 ECH