Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04785 ATGTCAACTCCTTCACCATCATCTTCTTCTTCTATTTGGGTATTGTCTAACATAAAACTTCAGTTCTTTGCCCGCATCAGGCGGTTTCTCCAATCCAAAGCAACCCGAAAGCGCTGCGACCCCTCTGATCGATTTGACATAGCAAAAAGCAGAGCAGAGCAGAGCATCAAGGTTGAAAATATTGAAACAGTTCAAGTTATGGAGAAGCATAAGGAAGAGGAGGAAGAGCCTGCGATCCTGTTACAGAGGACTGTGAAGATGCTTCACTTTGGGAGCTGGGAAGAGAAGGAGGTGGCAGCAAAAGAGATTGAAAGGTTAGCTAAAGAAGATGTCAAGGTTAGAAAGTTGATGACAGAACTTGGGGTGGTGCCGGTGTTGGTATCTATGGTGGCGTCACAGGTGGCTAGTCGCCGGCGAGCAGGGTTGACGGCGTTGATCCACCTAGCTGATGGAACTTACACGAACAAGGCTTTGATAGTGGAGGCAGGAATATTGTCCAAGCTGCCTAAGACAATTGACTTTGTAGATGAATCAACAATGAGTGAGTTTGCAGAGTTGCTTTTATCATTGTCATCTCTTGCAAACACCCAATTCCCTCTTACTTCATTAGACTTTCTACCATTACTTAGAGAAATTCTTGAGACAGGCTCAAGTAATTTTGATACCAAAGGGTCATGTTTGGGTGCCTTATACAACCTATCAACTGTGCTAGAGAATGCAGGCCCTTTGGTTTGTAGTGGGGTTGTCCCTACCCTCTTGGAACTGTCCTTAGTGAAAGAAATTTCAGAGAAGGCACTTGCCACACTTGGGAACTTGTTGGTGACTTCCATGGGAAAGAAAGCAATAGAGAACAGCTCAATGGTGCCAAAAAGCTTTATTGAGATCTTGTCATGGGAAGACAAACCCAAATGCCAAGAGTTGTCAGTTTATATTTTGATGATTCTGGCTCATCAAAGCTCATCACAAAGAGAGAAAATGGCACAGGCTGGGATTGTTCCTATGCTTCTTGAAGTGGTTTTATTGGGGAGCCCTTTAGCTCAGAAGAGAGCACAGAAACTATTGCAATGGTTTAAGGATGAAAGGCAAACAAAGATGGGGCCACATTCAGGTCCACAAACACCAAGATTTGCAATGGGTTCACCTGTTAATCAAAGAGATGCAAAAGAAGGGAAGAAATTGATGAAGAGTTTGGTGAAGCAAAGCCTACATAGGAATATGGAAATGATAACACAGAGGGCAAATGCAGCTGGGGAGTCTTCTAAACTGAAGTCTTTGGTCATCAGCACAAGTTCCAAGAGTTTACCTTATTAA 1311 0.4348 MSTPSPSSSSSIWVLSNIKLQFFARIRRFLQSKATRKRCDPSDRFDIAKSRAEQSIKVENIETVQVMEKHKEEEEEPAILLQRTVKMLHFGSWEEKEVAAKEIERLAKEDVKVRKLMTELGVVPVLVSMVASQVASRRRAGLTALIHLADGTYTNKALIVEAGILSKLPKTIDFVDESTMSEFAELLLSLSSLANTQFPLTSLDFLPLLREILETGSSNFDTKGSCLGALYNLSTVLENAGPLVCSGVVPTLLELSLVKEISEKALATLGNLLVTSMGKKAIENSSMVPKSFIEILSWEDKPKCQELSVYILMILAHQSSSQREKMAQAGIVPMLLEVVLLGSPLAQKRAQKLLQWFKDERQTKMGPHSGPQTPRFAMGSPVNQRDAKEGKKLMKSLVKQSLHRNMEMITQRANAAGESSKLKSLVISTSSKSLPY. 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04785 436 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 12 436 - -
Seca6g04785 436 SMART arm_5 236 274 IPR000225 GO:0005515
Seca6g04785 436 SMART arm_5 152 192 IPR000225 GO:0005515
Seca6g04785 436 SMART arm_5 110 150 IPR000225 GO:0005515
Seca6g04785 436 SMART arm_5 193 235 IPR000225 GO:0005515
Seca6g04785 436 Gene3D - 51 416 IPR011989 -
Seca6g04785 436 MobiDBLite consensus disorder prediction 363 389 - -
Seca6g04785 436 SUPERFAMILY ARM repeat 80 357 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04785 Seca-Chr6 115363223 115366081 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04785 94 374 U-box Gene Family AT1G67530 31.597 4.55e-21 94.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04785 - - gmx:100813828 700.279
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04785 6 115363223 115366081 Seca6g04785 6 115363223 115366081 ECH