Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04757 ATGTCAGAAGGATATGAGGAAACTTCATCGGGATCTTCCCAGAAATGTTCTTCATTTGACTTGAATGAAGAAGCTAGCTGCAGTGAAGATAACAACAACAATAAGGATGAGGCATGTGAACTCAGACATGAAGAGAATATTGAGAAAGCAAATATTGATGATGAGGGAAGTTCAGCAGCAAATAGAAGCAGCAGCAGCACATCAAATTCAAGAGGAACAGTTAGACAATATGTTAGATCCAAGATGCCTCGCCTTCGGTGGACTCCTGACCTTCATCTCTCATTTGTGCATGCTGTTGAAAGGCTTGGAGGTCAAGAGAGAGCAACACCCAAGATGGTGCTTCAGCTAATGAATGTAAGAGGACTCAGCATTGCTCATGTCAAGAGTCACTTGCAGATGTATCGAAGCAAGAAACTCGACGACCGCGGCCAAGTTCATATTTACTTTGCAGTACTAAGCCAAGAAGTAGGCCGTAGATCTCAGATGCTCCATCATCAATCCATGAGTCCTCATCAACATTTTAAGATGGGAAATGGTGGAATTATTCTAGCAAGTAATTTTAACCACCACAGTACTCATTTCCAACCCTCCTTCTCCCTTTCACGATCACATACAAACGCCACGGATTCCTCAAGGCACCAGCATTGGTACTACAATGATCATCAACCTTTAAGAATACCAATAGCTTCAAACCAAATTGCACCAAAGGATACAAATACAATTGCAACCGTGAGACCACTCAGCGAATTTCTTGAAGAGAAACGTTGGCCTAAAACTTGGTCATCACAAGCTGTTGAGCCAACTGAACGGATCACAGAATATCTATCGAGCTCCAATGAACCTCGCAACTATTCTGGTAGTTTCAACCTCCTACAATTTGATCCCCCATTTCGGATTAAGTTGAATCAAGAGAAAGACGAGCAAGAGTTGCCTGAATTGCAACTGGGTTTGAGTCATACAGATATTGGAATCGATGATCGTTGCAGAGAAACCCAAGAAATTAGCACCAAGTTATCACTTTCTTAG 1026 0.4211 MSEGYEETSSGSSQKCSSFDLNEEASCSEDNNNNKDEACELRHEENIEKANIDDEGSSAANRSSSSTSNSRGTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQERATPKMVLQLMNVRGLSIAHVKSHLQMYRSKKLDDRGQVHIYFAVLSQEVGRRSQMLHHQSMSPHQHFKMGNGGIILASNFNHHSTHFQPSFSLSRSHTNATDSSRHQHWYYNDHQPLRIPIASNQIAPKDTNTIATVRPLSEFLEEKRWPKTWSSQAVEPTERITEYLSSSNEPRNYSGSFNLLQFDPPFRIKLNQEKDEQELPELQLGLSHTDIGIDDRCRETQEISTKLSLS. 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04757 341 NCBIfam myb-like DNA-binding domain, SHAQKYF class 83 138 IPR006447 GO:0003677
Seca6g04757 341 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 62 185 IPR046955 GO:0003700
Seca6g04757 341 FunFam Myb family transcription factor 81 139 - -
Seca6g04757 341 MobiDBLite consensus disorder prediction 1 75 - -
Seca6g04757 341 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 79 139 IPR017930 -
Seca6g04757 341 MobiDBLite consensus disorder prediction 29 52 - -
Seca6g04757 341 Gene3D - 82 139 - -
Seca6g04757 341 MobiDBLite consensus disorder prediction 1 28 - -
Seca6g04757 341 MobiDBLite consensus disorder prediction 56 75 - -
Seca6g04757 341 Pfam Myb-like DNA-binding domain 85 135 IPR001005 -
Seca6g04757 341 SUPERFAMILY Homeodomain-like 81 137 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04757 Seca-Chr6 115075890 115080634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04757 40 140 G2-like Transcription Factor Family AT2G42660 60.396 8.45e-35 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca6g04757 Myb_DNA-binding 5.3e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04757 - - gmx:102669757 359.377
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04757 6 115075890 115080634 Seca6g04757 6 115075890 115080634 ECH
Seca6g04757 6 115075890 115080634 Seca12g05889 12 150635873 150640180 ECH
Seca12g05889 12 150635873 150640180 Seca6g04757 6 115075890 115080634 PCT