Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04754 ATGGGAATGAGATGGAACACATTTAGATTTTGGTTTAGAATTTATATTTGCTTGATATCTGTGTGGGGAATCCAAGAGTGTTGGTCGCTTAATGATGAAGGATTGGCTCTGTTGGAGTTCCGGGCAAAAATAACTTCTGATCCTTATGTTGCCTTGGCAAATTGGAATCCAAATGATTGTGACCCTTGCAAATGGTCAGGTGTTCATTGTGTCGATGGTAAAGTGCAAATGCTGGACCTAAACGGGCTATCTTTGGAAGGGACATTGGCTCCTGAGCTTGGGAAACTTGCTCACTTAAAATCTCTTGTGTTAAGCAAGAACAACTTTTCTGGCACCATTCCCAAAGAACTTGGAGATCTAGGCAAGCTGGAATTGTTGGATTTAAGGGAGAATAATTTGTCAGGAAGCATCCCAGCAGAAATTACCAGGATGTTATCGCTAAAACACTTGTTGCTTTGTGACAATAAAATTGAAGGTAGTGATTCTCAAGATCAAGGAAAATTCAGATTACTTGTTGCCGATTGTTCTCTAACAACCTTTTTTGCTTGCATCAATAGAAAGTTTGGACATTGCACATGCATTGTGTGGCAGAGCAACTTCAAGCAATGGAAAAAATCAGATTCATTGATTATTCCAATTAAAGTAGCACTTATGAAACACCTCAATGCCTTTATGCTTCCACGATTGAAATATTTGCTTCTGAATCTGATTGACACTCAAAACATGTCAGGTTCTAATGAGCTAGAGATTATCCAAAATGCACCAAATCTTGTCAATTCTGCACGTCGTAAGTTACTTGATCAGACAAGTAACATGGCAGCTGCACCTTATAGTGGTGGACCTACTATAGAGTTCAGTTCTGTTCCAATTACAGTGAGTAGTGGATCTTTCCCAGCTGTGCCAGATGCCAATAAGAAACAGAATCAGTCACCTGCACCACTGCCTTCACCTCCTGATCAAACAAGTCAACAACATTCTGCTAATGGAAGTGGTGCTTCTAGAAAGTTGTGGAAGTACATAATTATTAGTATAGCTGTGGTTGTGTTGGTCATTGTTATCATAATTCTTCTTTGCATTTGGCGAAAACGAGCAGCAAAAATAATAAGCCCATGGAAGACAGGAATAAGTGGACAGTTGCAGAAAGCATTTATAACAGGGGTGCCCAACTTGAATAGAGCAGAACTAGAGACAGCCTGTGAGGATTTCAGCAATATTGTTATTAATTTTGATGCATGCACCATATACAAAGGAACACTGTCCAGTGGGGTTGAGATTGCTGTTGTTTCTACTCTGATTACTTCTTCCCAAGATTGGTCTAAGAGCATGGAGATGAACTACCGGAAAAAGATTGATACTTTGTCCCGCATAAACCATAAGAACTTCATTAATCTTATTGGGTATTGTGAAGAAGAAGAACCATTCACAAGGATGTTGGTGTTTGAGTATGCTCCAAATGGAAGTCTATTTGAGCATTTGCATGTTAAGGAAGTTGAACGTCTTGATTGGAGTGAAAGGGTGAGGATTATAATGGGCACTGCTTATTGTCTTCAGTACATGCACCTTGATCTGAATCCACCCATAGCTCATAGCAAGCTTACTTCAAGTATGATATTATTAACAGATGATTTTGCCGCTAAGATTGCAGAGATCACTTTTGGAAACGTTGTATCAGCAGCTAAGACAAGTGGAGGTGATTCAAAGAAATCTGAGTCACCAACCCGTGATGACCTTGCAAACAATGTCTATGACTTTGGAATATTGCTGCTTGAAATCATTTCTGGGAAATTGCCTTGTTCTGAAGAAGAAGGCAATCTTGTGAATTGGGCTGCTGAGTACTTAAATGACAAGAAAAGCATCAGCTATATGATTGATCCATCCCTTAAGTCTTTCAAGGATAATGAACTTGATGTCATCTGTGAGGTGATCAAAGATTGTATCCAACCTGAAACAAAGTTAAGACCCACAATGAGGGACATAACTTCCAAATTGAGGGAAGTGATTAGTGTGTCACCTGAGCAAGCGGTCCCAAGACTTTCTCCACTCTGGTGGGCTGAATTGGAGATCTTGTCAGTGGAGGCCACTTAA 2085 0.399 MGMRWNTFRFWFRIYICLISVWGIQECWSLNDEGLALLEFRAKITSDPYVALANWNPNDCDPCKWSGVHCVDGKVQMLDLNGLSLEGTLAPELGKLAHLKSLVLSKNNFSGTIPKELGDLGKLELLDLRENNLSGSIPAEITRMLSLKHLLLCDNKIEGSDSQDQGKFRLLVADCSLTTFFACINRKFGHCTCIVWQSNFKQWKKSDSLIIPIKVALMKHLNAFMLPRLKYLLLNLIDTQNMSGSNELEIIQNAPNLVNSARRKLLDQTSNMAAAPYSGGPTIEFSSVPITVSSGSFPAVPDANKKQNQSPAPLPSPPDQTSQQHSANGSGASRKLWKYIIISIAVVVLVIVIIILLCIWRKRAAKIISPWKTGISGQLQKAFITGVPNLNRAELETACEDFSNIVINFDACTIYKGTLSSGVEIAVVSTLITSSQDWSKSMEMNYRKKIDTLSRINHKNFINLIGYCEEEEPFTRMLVFEYAPNGSLFEHLHVKEVERLDWSERVRIIMGTAYCLQYMHLDLNPPIAHSKLTSSMILLTDDFAAKIAEITFGNVVSAAKTSGGDSKKSESPTRDDLANNVYDFGILLLEIISGKLPCSEEEGNLVNWAAEYLNDKKSISYMIDPSLKSFKDNELDVICEVIKDCIQPETKLRPTMRDITSKLREVISVSPEQAVPRLSPLWWAELEILSVEAT. 695
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04754 694 Gene3D Phosphorylase Kinase; domain 1 373 482 - -
Seca6g04754 694 Gene3D Transferase(Phosphotransferase) domain 1 483 675 - -
Seca6g04754 694 SUPERFAMILY Protein kinase-like (PK-like) 413 663 IPR011009 -
Seca6g04754 694 SUPERFAMILY L domain-like 28 191 - -
Seca6g04754 694 Gene3D Ribonuclease Inhibitor 29 212 IPR032675 -
Seca6g04754 694 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 30 177 - -
Seca6g04754 694 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Seca6g04754 694 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Seca6g04754 694 FunFam Inactive receptor-like serine/threonine-protein kinase 374 482 - -
Seca6g04754 694 Pfam Protein tyrosine and serine/threonine kinase 414 663 IPR001245 GO:0004672|GO:0006468
Seca6g04754 694 ProSiteProfiles Protein kinase domain profile. 365 667 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04754 694 PANTHER PROTEIN MALE DISCOVERER 2 13 692 - -
Seca6g04754 694 MobiDBLite consensus disorder prediction 301 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04754 Seca-Chr6 115052435 115058103 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04754 78 666 Receptor kinase-like Gene Family AT5G56040 24.843 1.75e-44 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VI-2 Seca6g04754 PK_Tyr_Ser-Thr 2.1e-18 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04754 - - adu:107468254 926.006
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04754 6 115052435 115058103 Seca6g04754 6 115052435 115058103 ECH