LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca6g04751	ATGGAGAAAAAAGGAACAATTCTGATGCAAAGGTATGAGCTAGGACGCTTTCTTGGCCAAGGCAATTTCGCCAAAGTTTACCATGCAAGGAACTTGAAGACAGGCCAGAGCGTTGCCATCAAAGTCTTAAACAAAGAGATGATCATGAGGGTAGGCTTGAAGGAGCAAATCAAGCGCGAAATCTCAGTGATGCGTCTTATGAAGCACCCCAACATTGTGCAGCTCTATGAGGTCATGGCAAGCAAAACAAAGATATATTTTGCAATGGAATACGTGAAAAGTGGTGAGCTTTTCAACAAAGTGTCCCGAGGGAGGCTGGGGGAAGATGTGGCCAGAAAATATTTCCAGCAGCTGATTGAAGCTGTTGATCACTGCCACAGCAGAGGGGTTTATCACCGTGACCTCAAACCTGAAAATCTTCTCCTTGATGAAAATGGGGACCTCAAAGTTTCAGACTTTGGCTTGAGTGCATTGTTGGAACACAGGAAGAATGATGGCCTTCTTCACACAACTTGTGGCACTCCAGCTTATGTAGCACCTGAGGTGATCAGGAAGAAAGGGTATGATGGAGCCAAGGCTGACATTTGGTCTTGTGGGGTCATTCTCTATGTTCTCTTAGCAGGTTTTCTTCCTTTCAATGATAAAAATCTAATGGAAATGTATAGGAAGATTGCCAGAGCAGATTTCAAGTTCCCACAATGGTTCCGTTCAGATGTGAAAAGGCTTCTCTATAGAATTCTTGATCCCAATCCAAGGACAAGAGTTAGCATTGCTAAGATTATGCAGAGCAGTTGGTTTAGAAAAGGGTATAAGCAGATTGAAGCACCCCTGTTGCCACCTTTATCCCCTACAGGTGAGGATGTCTCGGATGTTCAGGATGCATTTGATTCATCAAGTTCAGATGGAGGTTCAGCATCAGATAAAGAAGAAGGCCCCATAAACCCATATTGTTTCAATGCATTTGATATCATATCACTGTCTTCAGGATTTGATCTTTCTGGTCTGTTTGAAAATGACAAGAGTGAAAGACAGCAGCAGGCAAGATTTACTACTAAAAAATCACCTTCCACAGTTGTGTCAAAACTTGAAGAGATAGCACAGATAGACGGTAGATTTAAGGTCCTGAAGAAAAACTGGATTGTTAGATTGGAGGGATGCAAGGCAGGGCCTAAAGGACAACTCAGTATAGATGCAGAAATTTTTGAAGTTACATCTTCCTTTCATATTGTTGAGGTGAAGAAAATTGCTGGAGACACATTGGAATATAGCAAGTTCTGGGAACAATGCTTCAAGCCTTCTCTAAATGAAATAGTTTGGGCTTGGCAAGGATATGAGCAACAGTAA	1344	0.4219	MEKKGTILMQRYELGRFLGQGNFAKVYHARNLKTGQSVAIKVLNKEMIMRVGLKEQIKREISVMRLMKHPNIVQLYEVMASKTKIYFAMEYVKSGELFNKVSRGRLGEDVARKYFQQLIEAVDHCHSRGVYHRDLKPENLLLDENGDLKVSDFGLSALLEHRKNDGLLHTTCGTPAYVAPEVIRKKGYDGAKADIWSCGVILYVLLAGFLPFNDKNLMEMYRKIARADFKFPQWFRSDVKRLLYRILDPNPRTRVSIAKIMQSSWFRKGYKQIEAPLLPPLSPTGEDVSDVQDAFDSSSSDGGSASDKEEGPINPYCFNAFDIISLSSGFDLSGLFENDKSERQQQARFTTKKSPSTVVSKLEEIAQIDGRFKVLKKNWIVRLEGCKAGPKGQLSIDAEIFEVTSSFHIVEVKKIAGDTLEYSKFWEQCFKPSLNEIVWAWQGYEQQ.	448

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca6g04751	447	Gene3D	Kinase associated domain 1, KA1	313	440	-	-
	Seca6g04751	447	CDD	STKc_SnRK3	11	265	-	-
	Seca6g04751	447	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	130	142	IPR008271	GO:0004672\|GO:0006468
	Seca6g04751	447	Gene3D	Transferase(Phosphotransferase) domain 1	3	300	-	-
	Seca6g04751	447	SUPERFAMILY	Protein kinase-like (PK-like)	8	290	IPR011009	-
	Seca6g04751	447	CDD	CIPK_C	319	435	-	-
	Seca6g04751	447	ProSiteProfiles	Protein kinase domain profile.	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g04751	447	FunFam	Non-specific serine/threonine protein kinase	3	91	-	-
	Seca6g04751	447	ProSiteProfiles	NAF domain profile.	313	337	IPR018451	GO:0007165
	Seca6g04751	447	MobiDBLite	consensus disorder prediction	291	305	-	-
	Seca6g04751	447	MobiDBLite	consensus disorder prediction	284	311	-	-
	Seca6g04751	447	PANTHER	CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED	6	424	-	-
	Seca6g04751	447	SMART	serkin_6	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g04751	447	FunFam	Non-specific serine/threonine protein kinase	2	306	-	-
	Seca6g04751	447	ProSitePatterns	Protein kinases ATP-binding region signature.	18	41	IPR017441	GO:0005524
	Seca6g04751	447	Pfam	NAF domain	316	374	IPR004041	GO:0007165
	Seca6g04751	447	Pfam	Protein kinase domain	12	266	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Seca6g04751	447	FunFam	Non-specific serine/threonine protein kinase	313	439	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca6g04751	Seca-Chr6	115029114	115030457	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca6g04751	1	443	CBL-interacting serine-threonine protein kinases	AT5G45820	63.514	0.0	586

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	CAMK_CAMKL-CHK1	Seca6g04751		Pkinase	7.2e-76	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca6g04751	K07198		-	gmx:100807927	693.345