Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04749 ATGAAGCCCTTTTGCAGATTGTTGATTCTCTTGGCGCTCGTTGCTCTCGTGGAATCTTCATGCAGCAACAGTACTACTGGTGACCAGGACCTGGTGTCAAAGGCCTTTCAATCTGTCTCTGGATTCAACGCTTCCTGGTTCCAACCAAGAGGTTCCAACTGTTCAAAGGCTGAGATTAGGTCGATAAAGCTTCCGTTTAGAAATTTGAGTGGGAGTATCTCATGGAGGTATCTGAGGAACATGTCCAAGTTGGAGGTTCTCGATCTGTCTGGGAATTATCTGCAAGGCCAGGTGCCAAACTGGTTCTGGGCAAGCTCAAGCTTATTGGAAGTGAATCTGTCCAAGAACCGGTTCGGAGGGAGCATTGCTTTGAAACCCACTTCACAAAATGGTTCCTTTTCGTCACTCCAAACACTCAATCTCTCCCACAACAGGTTCACCAATCTGGTTCAACTCTCTGGTTTTTCAAACCTGAAAAGTCTGGACCTTTCCCACAACAAGCTTGGAACTTTGCCTTCTGGGTTCCAAAATCTCACCAACCTAACCTACCTCGATCTCTCTAGCTGCAACATCAAAGGAAACGTAAAACCCATTTCTTCCATTCGCTCACTCACCCACTTGGATTTGTCAAACAACAGTTTGAATGGCAGTTTCCCTTCTGATTTCCCTCCTCTGAAGAGCATCAAGTTCTTGAACATCTCACACAACAACTTCAAATCCTCTGTTACCTTAGACAGGTTCAAAAAGTTTGGAAAATCAGCATTCATTCACGCCGGTAACAACTTCAACTACTACAACGCATCCAAGACGCCAAACCTTCATTACCAACCCCACCACACGGAAAAACCAAAGTCCATTCATTTACACACCGAGCAGAAGCAGAAGAAGAAACACAAGTCAAAAGGCAAAACCAAAACCATGATTGTGGCAGTGTCCTCTGCGTCAGGGCTTGTCCTTGTCGTGTTATGCGTATGGGCATTGTTGTGTTACAGAAAGAAGAGGCAATTGGCGAAAAGGAACAAATGGGCAATCTCCAAACCGATGATTCCATTGACCATTAAGATGGAGAAATCTGGGCCGTTCGCGTTCGAGACAGAGTCAGGGACATCATGGGTGGCTGACCTTAAGGAACCGTCTTCAGCACCAGTGGTGATGTTCGAGAAGCCTTTGATGAACCTCACCTTCGTCGACCTCATGGCTGCCACGTCACACTTTGGGAAAGACTCTCAGCTAGCAGAGGGTAGGTGTGGACCCGTCTATCGAGCTGTACTACCTGGAGACATCCACGTGGCAATCAAGGTCCTTGAAAACGCCAGAGACGTTGATCATGATGACGCTGTCTCTACCTTCGTTGACCTCTCCCACCTCAAGCACCCCAATCTCTTACCTCTTTCCGGTTACTGCATCGCAGGGAAGGAGAAGCTGGTATTGTACGAGTTTATGTCAAACGGGGATTTAGGTAGGTGGCTGCATGAGCTACCGACGGGGGAGACTAACGTGGAGGATTGGAGTGGTGACACGTGGGAGATTCAAAACGGCGTCGGTTCGCGAGCATCCTCTCCTGAAAAGATGGGGTGGCCAACACGACACCGTATCGCGGTTGGGGTAGCGCGTGGGCTAGCTTTCCTCCACCACGCGGGTTCGAAGCCCGTCGTCCACGGCCACCTGGTGACACCAAACGTCCTTCTCGCCGATGACTTCGAGCCTCGAATCGCTGATTTCGGGTTCCGGAAGTTCGGGCAGCAACAAGGCCCCCTTAATTGCAGCACCGAAACGGACGTGTATTGCTTCGGGGTGGTGCTGATGGAGCTTCTGACGGGGAAGCCCGGCACGGCCGAGACGGTGGTTTGGGTGCGGAAACTGGTTAGGGAGGGGCACGGGGTGAGGGCACTTGATGAGAGGCTCAGACTCGGTGGCGCTGACTCGGAAAGTGAGATGGTGGAGAGCCTCCGAGTCGCGTATCTCTGTACGGCCGAGTCACCGGGGAAGAGGCCCACCATGCAACAGGTGTTGGGCCTTCTCAAAGACATTCATCCTAGCCGCGGGCTTGACTGA 2055 0.5095 MKPFCRLLILLALVALVESSCSNSTTGDQDLVSKAFQSVSGFNASWFQPRGSNCSKAEIRSIKLPFRNLSGSISWRYLRNMSKLEVLDLSGNYLQGQVPNWFWASSSLLEVNLSKNRFGGSIALKPTSQNGSFSSLQTLNLSHNRFTNLVQLSGFSNLKSLDLSHNKLGTLPSGFQNLTNLTYLDLSSCNIKGNVKPISSIRSLTHLDLSNNSLNGSFPSDFPPLKSIKFLNISHNNFKSSVTLDRFKKFGKSAFIHAGNNFNYYNASKTPNLHYQPHHTEKPKSIHLHTEQKQKKKHKSKGKTKTMIVAVSSASGLVLVVLCVWALLCYRKKRQLAKRNKWAISKPMIPLTIKMEKSGPFAFETESGTSWVADLKEPSSAPVVMFEKPLMNLTFVDLMAATSHFGKDSQLAEGRCGPVYRAVLPGDIHVAIKVLENARDVDHDDAVSTFVDLSHLKHPNLLPLSGYCIAGKEKLVLYEFMSNGDLGRWLHELPTGETNVEDWSGDTWEIQNGVGSRASSPEKMGWPTRHRIAVGVARGLAFLHHAGSKPVVHGHLVTPNVLLADDFEPRIADFGFRKFGQQQGPLNCSTETDVYCFGVVLMELLTGKPGTAETVVWVRKLVREGHGVRALDERLRLGGADSESEMVESLRVAYLCTAESPGKRPTMQQVLGLLKDIHPSRGLD. 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04749 684 ProSiteProfiles Leucine-rich repeat profile. 135 156 IPR001611 GO:0005515
Seca6g04749 684 Gene3D Transferase(Phosphotransferase) domain 1 481 584 - -
Seca6g04749 684 Gene3D Transferase(Phosphotransferase) domain 1 585 682 - -
Seca6g04749 684 FunFam Calmodulin-binding receptor kinase CaMRLK 134 244 - -
Seca6g04749 684 Gene3D Ribonuclease Inhibitor 22 128 IPR032675 -
Seca6g04749 684 Pfam Leucine Rich Repeat 203 222 IPR001611 GO:0005515
Seca6g04749 684 PRINTS Leucine-rich repeat signature 158 171 - -
Seca6g04749 684 PRINTS Leucine-rich repeat signature 201 214 - -
Seca6g04749 684 FunFam Putative LRR receptor-like serine/threonine-protein kinase 366 480 - -
Seca6g04749 684 SMART LRR_typ_2 201 224 IPR003591 -
Seca6g04749 684 SMART LRR_typ_2 155 177 IPR003591 -
Seca6g04749 684 SMART LRR_typ_2 81 104 IPR003591 -
Seca6g04749 684 SMART LRR_typ_2 133 154 IPR003591 -
Seca6g04749 684 ProSiteProfiles Protein kinase domain profile. 405 681 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04749 684 SUPERFAMILY L domain-like 57 242 - -
Seca6g04749 684 Pfam Leucine rich repeat 68 118 IPR001611 GO:0005515
Seca6g04749 684 Pfam Leucine rich repeat 135 191 IPR001611 GO:0005515
Seca6g04749 684 SUPERFAMILY Protein kinase-like (PK-like) 382 674 IPR011009 -
Seca6g04749 684 Gene3D Ribonuclease Inhibitor 129 312 IPR032675 -
Seca6g04749 684 Gene3D Phosphorylase Kinase; domain 1 365 480 - -
Seca6g04749 684 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 41 677 - -
Seca6g04749 684 MobiDBLite consensus disorder prediction 277 304 - -
Seca6g04749 684 ProSiteProfiles Leucine-rich repeat profile. 157 179 IPR001611 GO:0005515
Seca6g04749 684 MobiDBLite consensus disorder prediction 289 304 - -
Seca6g04749 684 Pfam Protein tyrosine and serine/threonine kinase 408 671 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04749 Seca-Chr6 115007361 115009900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04749 57 677 Receptor kinase-like Gene Family AT5G07280 28.489 1.95e-67 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-2 Seca6g04749 PK_Tyr_Ser-Thr 9.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04749 - - gmx:100778920 1063.14