Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04745 ATGTCCACCTCTGTTATCAATGGAAATGATTCCCTCACTGGTCACATCATATCTACAACAATTGGAGGCAAAAATGGGGAACCCAAACAGACTATTAGTTACATGGCAGAACGCGTTGTAGGAACTGGATCATTTGGAATTGTTTTCCAGGCAAAATGCCTGGAAACTGGGGAGTCAGTGGCCATTAAGAAAGTTTTACAAGACCGAAGATATAAGAATCGTGAACTACAGTTAATGCGTGTGATGGATCATCCAAATGTGGTCTCTTTGAAGCATTGTTTCTTTTCCACTACAAGTGCAGATGAACTTTTTCTTAATTTGGTGATGGAATATGTTCCAGAGTCCATGTATAGGGTTTTAAAGCACTACAGTAATGCTAATCAAAGAATGCCAATCATCTATGTAAAGCTCTATATGTACCAGATTTTCAGGGGGTTGGCTTATATCCATACCGTTCCTGGCGTTTGCCACAGAGATTTGAAGCCTCAAAATATACTGGTTGATCCTCTCACACACCAAGTTAAGCTGTGTGATTTTGGAAGTGCAAAAATGCTAGTCAAAGGTGAAGCTAATATATCATACATATGTTCACGCTTCTATCGAGCTCCAGAACTTATATTTGGTGCCACAGAGTATACTACTTCAATTGATATTTGGTCAGCTGGCTGTGTCCTTGCTGAACTGCTTTTGGGCCAGCCATTATTCCCTGGCGAAAATGCAGTGGACCAGCTTGTACATATTATAAAGGTGCTTGGAACACCCACCCGGGAGGAAGTACGCTGTATGAACCCCAATTATAATGAGTTTAGGTTTCCACAAATCTTCCACAAAAAGATGCCTCCAGAAGCTATTGATCTTGCTTCCCGGCTTTTGCAGTACTCCCCAAGTCTTCGGTGCACTGCGCTTGAAGCATGTGCACATCCTTTCTTTGATGAGCTCCGAGAACCCAATGCTCACCTGCCAAATGGTCGTCCATTACCCCCTCTATTCAACTTCAAACAGGAAGTAAGTCCTTAA 1017 0.4218 MSTSVINGNDSLTGHIISTTIGGKNGEPKQTISYMAERVVGTGSFGIVFQAKCLETGESVAIKKVLQDRRYKNRELQLMRVMDHPNVVSLKHCFFSTTSADELFLNLVMEYVPESMYRVLKHYSNANQRMPIIYVKLYMYQIFRGLAYIHTVPGVCHRDLKPQNILVDPLTHQVKLCDFGSAKMLVKGEANISYICSRFYRAPELIFGATEYTTSIDIWSAGCVLAELLLGQPLFPGENAVDQLVHIIKVLGTPTREEVRCMNPNYNEFRFPQIFHKKMPPEAIDLASRLLQYSPSLRCTALEACAHPFFDELREPNAHLPNGRPLPPLFNFKQEVSP. 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04745 338 CDD STKc_GSK3 29 313 IPR039192 -
Seca6g04745 338 SUPERFAMILY Protein kinase-like (PK-like) 33 332 IPR011009 -
Seca6g04745 338 FunFam Glycogen synthase kinase-3 beta 18 113 - -
Seca6g04745 338 Gene3D Phosphorylase Kinase; domain 1 19 113 - -
Seca6g04745 338 Gene3D Transferase(Phosphotransferase) domain 1 114 337 - -
Seca6g04745 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 155 167 IPR008271 GO:0004672|GO:0006468
Seca6g04745 338 PANTHER GLYCOGEN SYNTHASE KINASE-3 ALPHA 3 335 - -
Seca6g04745 338 ProSiteProfiles Protein kinase domain profile. 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04745 338 Pfam Protein kinase domain 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04745 338 ProSitePatterns Protein kinases ATP-binding region signature. 40 64 IPR017441 GO:0005524
Seca6g04745 338 SMART serkin_6 34 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04745 338 FunFam Shaggy-related protein kinase kappa 114 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04745 Seca-Chr6 114964694 114969449 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04745 38 338 MAP Kinase Gene Family AT3G59790 35.913 4.03e-58 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_GSK Seca6g04745 Pkinase 2.1e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04745 K14502 - gmx:100779909 665.611