Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04743 ATGGGCATTTCAAAACCAGTGAATGATACAGGGTCATCTCAGACAGTCAGCAGTCATAGCCATAGGGTGCTTTCTGTTGTTATTGGCTTTAGTTGCACATTTGTAATTTCTGTGGTGCTGCTTGTCTATTGTTTGCATTGGTACAGATCACGCATCCTCTATACATCTTACGTGGAGCAAGATTGTGAATTTGATATTGGTCATTTGAAGAGGTTTTCCTTCCGTGAATTGCAAATTGCTACTGGAAATTTTAGTCCAAAAAATATCCTAGGACAAGGTGGTTTTGGGGTTGTATACAAAGGATGCCTTGCAAACAAAATGTTGGTGGCAGTGAAGCGGCTGAAAGATCCCAATTACACTGGAGAAGTGCAGTTTCAAACTGAAGTTGAGATGATTGGCTTGGCTGTGCATCGGAACCTCTTACGTCTTTATGGATTTTGTATGACACCAGATGAAAGGTTACTCGTTTATCCATACATGCCCAATGGCAGTGTTGCTGATCGCTTGAGAGAGACTTGCCGTGAAAAGTCATCCTTGGACTGGAACAGGCGAATGCGTGTTGCTCTTGGGGCTGCACGAGGGCTTTTGTACTTGCATGAACAATGCAATCCAAAAATAATCCACAGGGATGTCAAGGCTGCAAACATTTTGTTAGATGAAAGCTTTGAAGCTGTGGTGGGCGATTTTGGTCTTGCTAAGCTCTTAGATCAAAGGGATTCACATGTAACTACTGCAGTACGGGGTACTGTAGGGCACATTGCCCCTGAGTATCTCTCAACTGGACAGTCTTCTGAAAAAACAGATGTTTTTGGATTTGGCATATTACTTTTGGAGATCATAACAGGACAAAAGGCACTGGATGCTGGAAATGGTCAGGTCCAAAAGGGAATGATTCTTGATTGGGTTAGAACCTTATTTGAGGAGAAGCGGCTGGAAGTGTTAGTTGATAGGGATCTGAAGGGATGTTTTGATCCAGTAGAGTTAGAAAAAGCAGTGGAGTTGTCTTTACAGTGTACTCAGTCACTTCCTAGTTTGAGACCAAAGATGTCAGAGGTTTTGAAGATTCTAGAAGGTCTGGTTGGGCAGTCAATGCGGCCAGAAGAGTCACAAGGAGGGGCTAACCTGTACGATGAAAGGACTTGCAGTTTCTCTCAAAATTACAGTGATGTTCATGAAGAACCTTCCTTTATTATTGAAGCCATTGAGCTTTCTGGACCTCGGTGA 1224 0.4297 MGISKPVNDTGSSQTVSSHSHRVLSVVIGFSCTFVISVVLLVYCLHWYRSRILYTSYVEQDCEFDIGHLKRFSFRELQIATGNFSPKNILGQGGFGVVYKGCLANKMLVAVKRLKDPNYTGEVQFQTEVEMIGLAVHRNLLRLYGFCMTPDERLLVYPYMPNGSVADRLRETCREKSSLDWNRRMRVALGAARGLLYLHEQCNPKIIHRDVKAANILLDESFEAVVGDFGLAKLLDQRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLEIITGQKALDAGNGQVQKGMILDWVRTLFEEKRLEVLVDRDLKGCFDPVELEKAVELSLQCTQSLPSLRPKMSEVLKILEGLVGQSMRPEESQGGANLYDERTCSFSQNYSDVHEEPSFIIEAIELSGPR. 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04743 407 Pfam Protein kinase domain 87 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04743 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 206 218 IPR008271 GO:0004672|GO:0006468
Seca6g04743 407 Gene3D Phosphorylase Kinase; domain 1 54 159 - -
Seca6g04743 407 FunFam Somatic embryogenesis receptor-like kinase 1 160 375 - -
Seca6g04743 407 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 66 355 - -
Seca6g04743 407 Gene3D Transferase(Phosphotransferase) domain 1 160 366 - -
Seca6g04743 407 SUPERFAMILY Protein kinase-like (PK-like) 67 357 IPR011009 -
Seca6g04743 407 SMART serkin_6 84 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04743 407 ProSiteProfiles Protein kinase domain profile. 84 360 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04743 407 ProSitePatterns Protein kinases ATP-binding region signature. 90 112 IPR017441 GO:0005524
Seca6g04743 407 FunFam Somatic embryogenesis receptor kinase 1 54 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04743 Seca-Chr6 114958255 114960552 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04743 4 407 Receptor kinase-like Gene Family AT5G45780 72.660 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Seca6g04743 Pkinase 1.5e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04743 - - ccaj:109812711 770