Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04742 ATGGATCAAGCAGGAATCAAAGGCAGAGGTGAGGTATTGCATCCGGTTCTTGAAGGGGTAGATGGGAATTTAAGTCCTTTGGTTGAAAGGGTTGCAATTGATGCAATAGATAGTAGTAGCTTGGTTGACAGACCTAGTATGATTGGGGAAGTTGGAACTTCAGGAGAGGTGGGTAAGGATTCGGGATCCAATAAGGAGCTAAAGGAGGAGCCTGAGGATGTTAAGGGTCAGGACAAGTGTGATCAAGAAAATATATGTGATAAATTGCCTGGGGTTGATCAAGGAACTAGTTATAATTCAAACAATTTGGTTAATCAGGAAGTGCTTGAGACTGTGGTGGTAATAGAGCCTGTTCAAACTGAATACATCAATGGAGATAACAGGAAATTGGAAGCAAAAGCTAATGAATCAGAGCTGAACTTGGCATCCATGAAAGTGGCAAAAGGGGTGTCTGAAACAGATAAAAATTCATGTGTGATTGATATAAAGTCCAGCAGCTGCAAAGGGTTTTATGAGAATTCAGAAGGTGAAAGGATTTGTAGGATTTGCCATCTGACTTCTGGGCAGTCATCAGATGAAACAGCAGTGGATACTGCTAATAGTGCTACAAGCACAGATTTGATTCAGCTTGGTTGCGCGTGTAAAGATGAGTTGGGCATTGCACACCTTCATTGTGCTGAAGCGTGGTTCAAGGTTAAGGGAAACAGGTATCTGTTCTTGCCAAATATTTTTTTTAACCACAGGTTATGTGAGATATGTGGTGAGACCGCAAAGAATGTTTTGGGTGTTACCAATAATGGATTTATGGAAGAATGGTATGACAGAAGGTTCATGGACAATGATAGTGACACATCCCACAGCTTTGGTGGATGCTGGCGAGGACAGCCATTTTGTAACTTCTTGATGGCGTGCTTGGTAATAGCTTTTGTTCTGCCATGGTTTTTCCGTGTAAATATATTCTAG 963 0.4154 MDQAGIKGRGEVLHPVLEGVDGNLSPLVERVAIDAIDSSSLVDRPSMIGEVGTSGEVGKDSGSNKELKEEPEDVKGQDKCDQENICDKLPGVDQGTSYNSNNLVNQEVLETVVVIEPVQTEYINGDNRKLEAKANESELNLASMKVAKGVSETDKNSCVIDIKSSSCKGFYENSEGERICRICHLTSGQSSDETAVDTANSATSTDLIQLGCACKDELGIAHLHCAEAWFKVKGNRYLFLPNIFFNHRLCEICGETAKNVLGVTNNGFMEEWYDRRFMDNDSDTSHSFGGCWRGQPFCNFLMACLVIAFVLPWFFRVNIF. 321
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04742 320 Coils Coil 127 147 - -
Seca6g04742 320 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 163 263 IPR013083 -
Seca6g04742 320 PANTHER ZINC FINGER, RING-CH-TYPE 59 320 - -
Seca6g04742 320 MobiDBLite consensus disorder prediction 61 80 - -
Seca6g04742 320 SUPERFAMILY RING/U-box 174 256 - -
Seca6g04742 320 ProSiteProfiles Zinc finger RING-CH-type profile. 172 260 IPR011016 GO:0008270
Seca6g04742 320 SMART ringv_2 179 254 IPR011016 GO:0008270
Seca6g04742 320 Pfam RING-variant domain 180 253 IPR011016 GO:0008270
Seca6g04742 320 MobiDBLite consensus disorder prediction 44 80 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04742 Seca-Chr6 114949577 114951705 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04742 174 319 C3H Transcription Factor Family AT5G05830 37.013 2.83e-25 99.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04742 - - gmx:102668208 454.521