Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04737 ATGTTAATATTTCTTCTTGGTGTTATTCTTTGTAGGTATTTAGCAACTGCATCTTCTGATCATACTGTCAAGATATGGAATGTTGATGGTTTTACACTAGAAAAGACTTTGATAGGTCATCAGCGTTGGGTTTGGGACTGTGTCTTCTCAGTGGACGGCGCCTACCTTATTACAGCTTCCTCTGATACAACTGCTAGGCTTTGGTCCATGTCAACTGGTGAAGATATTAAGGTTTACCAAGGACATCATAAAGCTACAATCTGTTGTGCCCTACATGATGGGGCTGAACCCGCAACTTGCTGA 303 0.4158 MLIFLLGVILCRYLATASSDHTVKIWNVDGFTLEKTLIGHQRWVWDCVFSVDGAYLITASSDTTARLWSMSTGEDIKVYQGHHKATICCALHDGAEPATC. 101
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04737 100 ProSiteProfiles Trp-Asp (WD) repeats profile. 37 78 IPR001680 GO:0005515
Seca6g04737 100 PANTHER G BETA-LIKE PROTEIN GBL 12 96 IPR037588 GO:0031929|GO:0031931|GO:0031932
Seca6g04737 100 SUPERFAMILY WD40 repeat-like 12 93 IPR036322 GO:0005515
Seca6g04737 100 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 37 74 - -
Seca6g04737 100 ProSiteProfiles Trp-Asp (WD) repeats profile. 12 36 IPR001680 GO:0005515
Seca6g04737 100 SMART WD40_4 30 69 IPR001680 GO:0005515
Seca6g04737 100 Gene3D - 10 97 IPR015943 GO:0005515
Seca6g04737 100 Pfam WD domain, G-beta repeat 34 69 IPR001680 GO:0005515
Seca6g04737 100 Pfam WD domain, G-beta repeat 12 27 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04737 Seca-Chr6 114909664 114911260 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04737 14 80 Eukaryotic Initiation Factors Gene Family AT2G46290 35.821 2.42e-08 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04737 K08266 - gmx:100781599 188.734