Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04724 ATGACTAGGGCTATCCGCAATAGGGTACTTAAGGATGCCAATGGTGATATCAGTGATCATCTACGCAACCACATCCATTTAACAAATTGCATTCACTTGAAGAACCATATGCACAAGAACAGCCCTATACTGGCTGATAGGTCAATCATGAGGGACCTTGTTGTGCTGCAGAGATCACGCTCTCTCAGGGACCCTTCTGCAAGTCCTCCATCATGGAAGTCACCTTCTGTAGTTGACATACTTTACAAAAAAGCTGAAAATGATGCCATGGCTATGGGGGGAAGAAGGTCTATAGGTGTTGAGCGCAGGAAGGAAGGGAGGAGATTGTCTGGAACCTCACCACCCTTGGTGAATATAGGTGCATCAAGAGTTGCTCCAGGTGAGGTTAGTAGGGGTCATGATGCGGTACCGGCAACTAGTGAACGAAGTAGCAGGAGTGGAATGGGGGATGGGAGGAGAGTTGGGAGAGAAGAATCTGGTAGGAAGAGTGATAGGCCTGATTATTTGGATGTTAGTCAAGGGCAACCCCTAGATCAAGCTGGCAGAAGTTTGGCTGAAGATGTTATTTCAAGGCACTCTGAGTCTAAAGAGAGAAGGAGCAAACAGAGGGGGAAGAATGTTCAAGTTAAGACCCTTTCTGAGCAGCTGAATGATGTTCCATTGGATAGTGATGATTTAGCATCATCAAACATTCATTTTCGAGGAAGGTTTCCAAGACAGGAGAAAATTATTGAGGAGGCAGAAGCTGTCATGCGTGCTCATGGAAGTGGAATGAATAGGGTAAAAAGGCGTAAATTTCGAAGTGCAAGAAGAGCTCGGGTTGCTACAGCATCAAGAGATATTGGTGCTGAGAATGAATTGTCTGTGGCTTCCAACTCATTAGCTCAGGGTTCAGCCCACCAGAAATATCACTCTGAGGAAGTTGATGAATATGCAGATGACAATGTTACTAGGGCTCCAAAAAATGGGTGTGGTATTCCTTGGAATTGGTCCAGAATTCATCACAGAGGTAAAACATTCCTTGACATGGCTGGAAGAAGTTTTTCTTGTGGTTTATCTGACTCAAGGCTGAAGAAAGGGGCATTAACTACCAATGGAAGAAATATTTCTGAGATGCCTGTGGCATCTGAGCAGTCAAGCTCATATACTAAATCTGATGCAGAGGCACTGCCTTTACTAGTTGATGCGTCTGGATCTCATGGAAGCACTGATAATGCTTGCTGGGGCCATGACTATTCTGGGGAACTAGGTCTTTTTGGTGATCATTTATTCAAGCATGATATTGATTCTGATCTTGCTTCTGAAGCTAGATCTGGTGGCCAACATAAGTTGAGAGGGAATCGTCATGGTAGACACCAAAGCTTAACACAAAAATATATGCCACGGACCTTCAGAGATTTGGTTGGACAGAATTTAGTGGCACAAGCTCTTTCAAATGCAGTAATGAAAAGGAAAGTTGGGTTGTTGTATGTGTTTTATGGTCCCCATGGCACTGGAAAAACTTCCTGTGCTCGCATATTTGCCAGAGCTTTGAATTGTAATTCTTCAGAACACCCAAAACCTTGTGGCTTTTGCAATTATTGCATAGCACATGATATGGGCAAGAGTAGAAATATAAGGGAAGTTGGTCCAGTCAGTAATTTTGACTTTGAGAGCATCATGGATCTACTTGATAATATGATTGTTTCCCAGCTTCCATCACAATATAGAGTGTTTATTTTTGATGACTGTGATACTCTGTCAGCAGATTGTTGGAATGCTATATCAAAGGTCATTGATCGAGCACCTAGACGTGTGGTTTTTATCCTTGTCAGTTCTAGTCTTGATGTCTTGCCTCATATAATAATATCCAGGTGTCAAAAATTCTTTTTCCCAAAGCTGAAGGATGCAGATATTATATACACACTGCAGTTGATCGCAACCAAAGAAGGTCTAGAAATTGATAAGGATGCTCTGAAACTCATTGCATCAAGATCGGATGGATCATTGAGAGATGCTGAGATGACCCTTGAACAACTTAGTTTGCTTGGGCAGAGAATATCTGTTCCTCTAGTTCAGGAACTGGTAGGGCTCATCTCTGATGAGAAATTGGTGGATCTGCTTGATTTGGCATTATCTGCAGACACAGTTAACACTGTGAAGAATTTGAGAGTAATCATGGAAACTGGTGTTGAGCCATTGGCTTTAATGTCACAACTTGCTACAGTAATTACTGATATACTTGCTGGGACCTATGATTTCACAAAAGAAAGGCGAAGAAGGAGGTTCTTCCGGAGACAACCATTGTCCAAAGAAGACATGGAAAAGCTTCGCCAAGCTCTGAAAACTTTATCTGAGGCTGAAAAGCAGTTGAGGATGTCCAATGACAAGCTAACATGGTTGACTGCTGCATTGCTTCAACTTGCTCCTGACCAGCAATATGTGTTGCCTACTTCATCTGATAATAGTTTCAACCATAGTCCCTTGGCACTAAAAAATGCAGATGTGAGAGAAGCTGCTAGAATCACTGGTAATCCTGTTGAAATTCCTAACAAAGGCAGACGATTGTCAATGGATGCTAGAATAGAAAATTTCCATGCTGGGAGCTCAGCAGATGGTATGACAAAGGGTCATAGTTCAGAGAAAAGAAGACTTAGTGTGTCTGGTTTTCCTCCTCAACATACTTATTCACATGCCACCCATAATAAGATTAGGATAAATGAGAGGCAGATCTTGGGTAAAAACCGTAAAGAAATTGAAGAGATATGGTTAGAGGTGCTTGAGAGAATTCAAGTTACTGGTCTGAAAGAGTTTTTGTATAAAGAAGGCAAGCTGATCTTTGTTAGTTTTGGGGCAGCTCCAACTGTGCAGCTAATGTTTAGTTCTCAACTGGCTAAATCTACTGCTGAGAAGTTCACTGGTCACATCTTACAAGCATTTGAATCTGTCCTGGGATCTTCTATAACCATAGAAATTAGATGTGAGTCAAATAAAGATGCAGGCTCAGCTGCTCAACTGCCTCTTATATTGCCTGCTTTCAATGATGGTTCGTCTCAAATTAGAGACATAAATGGTGTTGGCACTGAAGCTCATCCTTCACTAATTGATTCTGTTGAAAAGAGAAGGGGTGAAATTGTAGAAGAAGCATCTTCTCATGTGGAGCACAAGAATAATGAGCAGCAGGTTGATGCTCATACAGCATCTTATAAAAGTCTAGAAGGTACAAGTATAGGACAAGCATCAGCTTCCCAAAAAGGGCCAATTGTTAAGTCGCATTTAGACAGAAGAAAGCTTAGGGAGCAAGGTCAAAGTCGAAGTCTTGTAAGAAGTAAGGTATCTCTTGCTCATGTAATCCAGCAGGCTGAAGGCCAGCGAAGTGGGTGGTCAAAACGCAAAGCAGTTTCTATTGCTGAAAAGCTTGAACAAGAAAATCTGAGATTGGAACCAAGATCAAGGAGCTTACTATGCTGGAAAGCAACAAGAGTAACCCGTCGGAAGCTGTCGCGCTTGAAAATCAGAACCCGAAAACCACGTGCATTGCTGAACCTTGTCTCATGTGGGAAATGTCTCTCTACAAAATCTCCGAGGTAG 3570 0.4221 MTRAIRNRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSRSLRDPSASPPSWKSPSVVDILYKKAENDAMAMGGRRSIGVERRKEGRRLSGTSPPLVNIGASRVAPGEVSRGHDAVPATSERSSRSGMGDGRRVGREESGRKSDRPDYLDVSQGQPLDQAGRSLAEDVISRHSESKERRSKQRGKNVQVKTLSEQLNDVPLDSDDLASSNIHFRGRFPRQEKIIEEAEAVMRAHGSGMNRVKRRKFRSARRARVATASRDIGAENELSVASNSLAQGSAHQKYHSEEVDEYADDNVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSFSCGLSDSRLKKGALTTNGRNISEMPVASEQSSSYTKSDAEALPLLVDASGSHGSTDNACWGHDYSGELGLFGDHLFKHDIDSDLASEARSGGQHKLRGNRHGRHQSLTQKYMPRTFRDLVGQNLVAQALSNAVMKRKVGLLYVFYGPHGTGKTSCARIFARALNCNSSEHPKPCGFCNYCIAHDMGKSRNIREVGPVSNFDFESIMDLLDNMIVSQLPSQYRVFIFDDCDTLSADCWNAISKVIDRAPRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQLIATKEGLEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGTYDFTKERRRRRFFRRQPLSKEDMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSSDNSFNHSPLALKNADVREAARITGNPVEIPNKGRRLSMDARIENFHAGSSADGMTKGHSSEKRRLSVSGFPPQHTYSHATHNKIRINERQILGKNRKEIEEIWLEVLERIQVTGLKEFLYKEGKLIFVSFGAAPTVQLMFSSQLAKSTAEKFTGHILQAFESVLGSSITIEIRCESNKDAGSAAQLPLILPAFNDGSSQIRDINGVGTEAHPSLIDSVEKRRGEIVEEASSHVEHKNNEQQVDAHTASYKSLEGTSIGQASASQKGPIVKSHLDRRKLREQGQSRSLVRSKVSLAHVIQQAEGQRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKATRVTRRKLSRLKIRTRKPRALLNLVSCGKCLSTKSPR. 1190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04724 1189 CDD HLD_clamp_pol_III_gamma_tau 627 690 IPR045085 -
Seca6g04724 1189 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 456 841 - -
Seca6g04724 1189 Pfam DNA polymerase III, delta subunit 470 627 - -
Seca6g04724 1189 SUPERFAMILY post-AAA+ oligomerization domain-like 698 801 IPR008921 GO:0003677|GO:0006260
Seca6g04724 1189 MobiDBLite consensus disorder prediction 93 208 - -
Seca6g04724 1189 MobiDBLite consensus disorder prediction 146 168 - -
Seca6g04724 1189 NCBIfam DNA polymerase III subunit gamma/tau 453 801 IPR012763 GO:0003887|GO:0005524|GO:0006260|GO:0009360
Seca6g04724 1189 Coils Coil 763 790 - -
Seca6g04724 1189 Gene3D - 628 690 - -
Seca6g04724 1189 MobiDBLite consensus disorder prediction 185 204 - -
Seca6g04724 1189 FunFam DNA polymerase III subunit gamma/tau 628 690 - -
Seca6g04724 1189 Gene3D - 445 624 IPR027417 -
Seca6g04724 1189 FunFam DNA polymerase III subunit gamma/tau 449 626 - -
Seca6g04724 1189 MobiDBLite consensus disorder prediction 861 885 - -
Seca6g04724 1189 Pfam DNA polymerase III subunits gamma and tau domain III 683 801 IPR022754 GO:0003887
Seca6g04724 1189 SMART AAA_5 486 627 IPR003593 GO:0016887
Seca6g04724 1189 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 489 674 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04724 Seca-Chr6 114807129 114815025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04724 453 751 Core DNA Replication Machinery Family AT1G21690 23.920 2.83e-13 70.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04724 - - gmx:100809005 2023.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04724 6 114807129 114815025 Seca6g04724 6 114807129 114815025 ECH