Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04721 ATGGCTTCAGGGGCAATTTTTTCGTCTTTGCGGCGGAGAAGGTCGCCGACGTTGGAAGCGTTTCTCGCCCCAGTTGACTTGAGCGACGTCGCTTTGATACAGACCCTTGTATCGGTGGCCAACGAGCTTGTGTCGTGCTTTTCCAAGTGTCCGTTCTTCTTTCAGCGCAAGAACTCGCGGTCTCTGATCCGAAAAGTGGAGGTTTTTCAGCTGCTTCTGGAGTATTTGAAGGATTCTGGTTGTGGTGCTTGTCTTCCACCTACCGCGGTGCTTTGTCTTAAGGAGCTTTACCTGCTGATGTACCGGTCCAAGATTCTTCTTGATTATTGCGCGCAATCGAGTAAGTTATGGCTTTTGCTTCAGAACCATTCTATTTCCGGTCACTTCCATGATTTGAACCAAGAGATTTCGACCCTTTTGGATGTTTTTCCGGTTAAGGATATTGGGTTGAGTAAGGATGTTAGGGAACAGGTTGAGTTGTTGCAGAAGCAGTCAAGGAGGGCTAAGTTGTTTATAGACATGAAGGATGATGCTCTTAGGATCCGCTTCTTTTCGTTTCTTGATGAGTTTGAGAATGGGCGGATTCCTGATTCAGCTGAATTGCGATCTTTCTATGTAGAAAAGTTGCGGATTCTGGATGCTGCAAGTTGTAGAGATGAAATTGATGCTTTGGAGGAGCAGATTGTTAATCATGAGGGTGACATTGAGCCTACAATTTCTGTGCTTAAAGGGTTGGTGGCCATGACTCGGTATTGCAGGTTTTTGCTTTTTGGCTTTGAGGACGATGAGCTTGACTTGGAAAATGGAGGAGGTCAGAAGAAGCCTAAGAAGAGATTGATTACTCAGGAAATTGCTGAAACATTTTTAACTGTTCCAAAGGACTTTTGTTGCCCTATATCATTGGATGTGATGAGAGACCCGGTGATAATTTCCACAGGTCAAACTTATGATAGGAGTTCCATTTCAAGGTGGATGGAAGAAGGGCATACAACTTGCCCAAAGACAGGACAAATGCTTGCCCATAATCGTCTTGTTCCTAATCGTGCTCTGAGGAATTTGATTGTGCAGTGGTGTGCTGCTCATGGAGTTCCCCTTGACCCACCAGAGGTCATGGATCCTATGGGTGAATCCTTTGCATCTGCTTGTCCAACCAATGCTGCCCTTGAAGCCAACAGAGCCACTGCAGCACTTCTCATTCAACAGCTAGCAAATGGGTCACAAACTGGAAAGACTATCGCTGCCCGTGAGATACGATTGCTAGCAAAAACTGGTAAAGAAAACCGTGCTTTCATTGCAGAAGCAGGGGCAATTCCTCATCTTAGGAACTTGCTTTCATCACCGAATGCTGTTGCTCAGGAGAATTCAGTAACTGCATTGCTCAACCTATCCATTTTTGACAAGAACAAAAGTCGAATTATGGATGAGGAAGGCTGTCTAGGATCAATTGTTGATGTGTTGAGATTTGGGCACACAACAGAAGCAAGGGAAAATGCTGCTGCAACATTGTTCAGCCTATCAGCCGTCCATGACTATAAGAAAATAATCGCAGATAAGACAGGAGCTGTTGAAGCACTAGCAGGGCTCTTGCAAGAGGGAACTCCAAGAGGAAAGAAGGATGCTGTAACAGCTTTGTTTAATCTTTCCACACACACTGAGAATTGTGTTAGAATGATAGAGGCAGGGGCAGTATCAGCTCTCGTTGGGGCTTTGGGGAATGAAGGAGTTGCTGAGGAAGCAGCAGGTGCCCTGGCCTTGATTGTTCGACAGCCAGTTGGGGCCAAAGCAGTAGTGAGCGAGGAAGAAGCAGTAGCTGGATTGATAGGAATGATGCGATGTGGAACACCAAGAGGCAAAGAGAATGCAGTTGCGGCATTGCTTGAGTTGTGCCGGAGTGGAGGAGCCGCTGCAACTGAAAGGGTGGTTAAGGCACCAGCTTTGGCTGGTTTACTTCAAACCCTGCTTTTCACAGGGACAAAGCGAGCAAGACGAAAAGCAGCTTCACTTGCTAGAGTGTTTCAGAGATGTGAGAATGCATCTTTACATTATGGTGGATTAGGTGTAGGGTATGCATTTGCAAGCAATTCAGCTCAAAATAGGGATACAAGCTTTGCGGGTGATGTTTCAGTACCGATGTCCATTTCTGTCCCTGTGTTATAG 2157 0.4599 MASGAIFSSLRRRRSPTLEAFLAPVDLSDVALIQTLVSVANELVSCFSKCPFFFQRKNSRSLIRKVEVFQLLLEYLKDSGCGACLPPTAVLCLKELYLLMYRSKILLDYCAQSSKLWLLLQNHSISGHFHDLNQEISTLLDVFPVKDIGLSKDVREQVELLQKQSRRAKLFIDMKDDALRIRFFSFLDEFENGRIPDSAELRSFYVEKLRILDAASCRDEIDALEEQIVNHEGDIEPTISVLKGLVAMTRYCRFLLFGFEDDELDLENGGGQKKPKKRLITQEIAETFLTVPKDFCCPISLDVMRDPVIISTGQTYDRSSISRWMEEGHTTCPKTGQMLAHNRLVPNRALRNLIVQWCAAHGVPLDPPEVMDPMGESFASACPTNAALEANRATAALLIQQLANGSQTGKTIAAREIRLLAKTGKENRAFIAEAGAIPHLRNLLSSPNAVAQENSVTALLNLSIFDKNKSRIMDEEGCLGSIVDVLRFGHTTEARENAAATLFSLSAVHDYKKIIADKTGAVEALAGLLQEGTPRGKKDAVTALFNLSTHTENCVRMIEAGAVSALVGALGNEGVAEEAAGALALIVRQPVGAKAVVSEEEAVAGLIGMMRCGTPRGKENAVAALLELCRSGGAAATERVVKAPALAGLLQTLLFTGTKRARRKAASLARVFQRCENASLHYGGLGVGYAFASNSAQNRDTSFAGDVSVPMSISVPVL. 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04721 718 Coils Coil 214 234 - -
Seca6g04721 718 CDD RING-Ubox_PUB 292 344 IPR045210 -
Seca6g04721 718 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 364 IPR013083 -
Seca6g04721 718 Pfam U-box domain 291 361 IPR003613 GO:0004842|GO:0016567
Seca6g04721 718 ProSiteProfiles U-box domain profile. 290 364 IPR003613 GO:0004842|GO:0016567
Seca6g04721 718 Gene3D - 373 519 IPR011989 -
Seca6g04721 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 435 477 IPR000225 GO:0005515
Seca6g04721 718 SUPERFAMILY ARM repeat 397 672 IPR016024 -
Seca6g04721 718 FunFam RING-type E3 ubiquitin transferase 290 365 - -
Seca6g04721 718 FunFam RING-type E3 ubiquitin transferase 367 689 - -
Seca6g04721 718 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 520 562 IPR000225 GO:0005515
Seca6g04721 718 SMART arm_5 424 464 IPR000225 GO:0005515
Seca6g04721 718 SMART arm_5 509 549 IPR000225 GO:0005515
Seca6g04721 718 SMART arm_5 550 588 IPR000225 GO:0005515
Seca6g04721 718 PANTHER U BOX DOMAIN-CONTAINING 61 675 - -
Seca6g04721 718 SMART Ubox_2 294 357 IPR003613 GO:0004842|GO:0016567
Seca6g04721 718 Gene3D - 520 674 IPR011989 -
Seca6g04721 718 SUPERFAMILY RING/U-box 280 364 - -
Seca6g04721 718 Pfam Armadillo/beta-catenin-like repeat 425 463 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04721 Seca-Chr6 114781991 114784147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04721 1 718 U-box Gene Family AT1G29340 70.163 0.0 961
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04721 - - gmx:100811153 1218.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca6g04721 6 114781991 114784147 Seca6g04721 6 114781991 114784147 ECH
Seca12g05930 12 151117818 151119980 Seca6g04721 6 114781991 114784147 PCT