Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04720 ATGATGAAGTGGGGAGGAAGAAAACCTTCTTCTTCTTCTTCTAGACCTTCTCATGCATCTCCTTTTTCTTGGCTGTCCAAGTTCAAGCAGATGAGAATCAATTCAGAGCCAAATCCTGCAAAAATGAAGCACAAGGAAAAGCAGAATTCACCAAAGCATTCATGTGGAAATGGAGATGATGGTGCTTTCTGGAGACAATCATATGTTGAAGAGAGTCAAGAGGATATGAAATTGAAATGTAAAGACATTGATGAGAATCTCATTCCATCCTCAAGTTGCCATGGTGGTGGAAGAAATGCTAAGAAAGATAGACAAAGAGAAAGTACCCTCAAGTTAAAGGAGAAGGATAAATTGTTGAATGATAGGAAGGTTTCAAGGGAGATGGAAGAGTTTAATAGAGAAAAGGAATATGAAAACTTAAGGAGGAGATTTGAGAGGAAAGCACAACAAGTTTTGCAAGAGCAACTCTTGAAATTAGAAAGAGAGGAAGTTGAGTTTGCATCAAGTAAAGCAGTAGAAAAAGATGTGCTGCTGCAATTTGAATCCCCTAGAACAATCTGCACACCAAGAACACATTCTTTTGCTTCTTCTTCAGATTCTAAGAATTCTAGCCTTAGAAATATCATAGAAGATCGTGTGTTTAGTACCAAGAGAATTGAGAAAACTACTGATGACAGGCTGTCTCAGAAGAAATTGAGTTCTGAGAAGCAGAATTTGGAACAAATTAAGGAGTTGAAGGTAAGGACTAACAAACAGAGGCAACCACTTCATGTTCAGAGGAGGAAACCAAAGCATAGCCCCTGCAGGGTCAGAATATATTCTCCAAGGATGGTTTCCAAGGTTGAAACTTGCAAAATAAAGGCTCTAGAAGACATGAGGAAAGCAAAATTGAAGATGAAGAAAGAAAGGGAGGAAATTGTGGAGGAAACACCAGATTTAGATAGCTTTGCTGTGATTAAATGCTCATTAGATCCAAAGCAGGACTTCAGAGATTCAATGATTGAGATGATCATTGAGAAACAGATTAGGCAGCCAGAAGAAATGGAAGAGCTGTTGGCATGTTATCTCACTTTGAATGCTGATCAGTATCATGATCTCATCATCAAAGTATTCCGCAAGGTATGGTTTGACATGAGCCAATATGGTTTGGGTATTAAATCAGACATGCAATGGTGTTACTATGAACAACAACCTCTGTCTAGTTGA 1206 0.3847 MMKWGGRKPSSSSSRPSHASPFSWLSKFKQMRINSEPNPAKMKHKEKQNSPKHSCGNGDDGAFWRQSYVEESQEDMKLKCKDIDENLIPSSSCHGGGRNAKKDRQRESTLKLKEKDKLLNDRKVSREMEEFNREKEYENLRRRFERKAQQVLQEQLLKLEREEVEFASSKAVEKDVLLQFESPRTICTPRTHSFASSSDSKNSSLRNIIEDRVFSTKRIEKTTDDRLSQKKLSSEKQNLEQIKELKVRTNKQRQPLHVQRRKPKHSPCRVRIYSPRMVSKVETCKIKALEDMRKAKLKMKKEREEIVEETPDLDSFAVIKCSLDPKQDFRDSMIEMIIEKQIRQPEEMEELLACYLTLNADQYHDLIIKVFRKVWFDMSQYGLGIKSDMQWCYYEQQPLSS. 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04720 401 MobiDBLite consensus disorder prediction 87 108 - -
Seca6g04720 401 ProSiteProfiles OVATE domain profile. 318 377 IPR006458 -
Seca6g04720 401 MobiDBLite consensus disorder prediction 1 63 - -
Seca6g04720 401 Coils Coil 134 162 - -
Seca6g04720 401 MobiDBLite consensus disorder prediction 7 33 - -
Seca6g04720 401 Coils Coil 232 252 - -
Seca6g04720 401 MobiDBLite consensus disorder prediction 38 53 - -
Seca6g04720 401 NCBIfam uncharacterized plant-specific domain TIGR01568 317 378 IPR006458 -
Seca6g04720 401 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 141 379 IPR038933 GO:0045892
Seca6g04720 401 Pfam Transcriptional repressor, ovate 322 378 IPR006458 -
Seca6g04720 401 Coils Coil 285 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04720 Seca-Chr6 114775760 114776965 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca6g04720 Ovate 2.4e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04720 - - gmx:102666239 450.669