Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04719 ATGGAGGAAGCTCAGGGTAGTTCCAATTCTCTGCCTCCTTTCCTCGCCAAGACTTATGAGATGGTGGATGATCCTTCCACTAATAGCATTGTTTCATGGAGTACCTCCAACAAGAGTTTCATTGTTTGGAATGCACTTGAATTTGCAAGGGATTTGTTGCCTAAATTCTTTAAGCACAATAACTTCTCTAGTTTTATCAGACAGCTCAACACTTATGGCTTTAGAAAGATTGACCCTGAACAATGGGAATTTGCAAATGAGGATTTTGTTAGAGGTCAACCACATCTTTTGAAGAATATTCATAGGCGCAAACCAGTTCATAGCCATTCTTTGCAAAATCTCCAAGGGGCTGGTCCACTACCAGAATCTGAACGGCAGAGTTTGAAAGGTGAGATAGAGAAGCTTAAACATGATAAAGAGCAACTTCTTCTGGAGTTACAGAAACATGAACAGGAGTGGAATATGTATGAGATACAATTACATTGCTCAAAGGATCGATTGGAAAAGTTGGAAATGAAGCAACAAAGTATGCTCTCTTCTGTTTCTCAAGTGCTGCAGAAACCTGGGATTGCCTTAAATCTCTGGCCACTAACAGAAAACATGGATAGGAAACGAAGGTTGCCGAGAAGTGGTCATTTAAGTGATGAAGCTAGTATTGAAGATCCTATGGAATCTTCTCAAGTGTTACCTGGAGAAAATGCTGAGAGTACCTCTATGTTCACATCAAACATGGAGCGATTGGATCAGCTTGAGTCATCCATGACGTTTTGGGAGAATATTATTCATGATGTTGGTGACATCTCTCTTCAAAGTCATTCAAACTTGGATTTTGATGAATCTACAAGTTGTGCAGATAGTCCAGCTATATCTTGTGTGCAACTAGATGTTGAAATTCAGCCCAAGTCACCTGGAATCGACATGAACTCTGAACCAGCTGTAGCTGCTGTTCCTGATCCTGTTGCATCAAAAGAACAACCTGTAGGAACTGCCCCTGTGACTACTGGTGTTAATGATGTATTCTGGGAACAATTCTTGACAGAAAATCCTGGTTCCCATGAAACACAGGAAGCACATTCAGAAAGAAAGGATTCTAATGGAAGAAGTAATGAAGGAAAACCTGGTGACCTTGGAAGATTTTGGTGGAACATTAGGAATGTAAATAATCTTCCAGAACAGATGGGGCATTCTTAA 1191 0.4039 MEEAQGSSNSLPPFLAKTYEMVDDPSTNSIVSWSTSNKSFIVWNALEFARDLLPKFFKHNNFSSFIRQLNTYGFRKIDPEQWEFANEDFVRGQPHLLKNIHRRKPVHSHSLQNLQGAGPLPESERQSLKGEIEKLKHDKEQLLLELQKHEQEWNMYEIQLHCSKDRLEKLEMKQQSMLSSVSQVLQKPGIALNLWPLTENMDRKRRLPRSGHLSDEASIEDPMESSQVLPGENAESTSMFTSNMERLDQLESSMTFWENIIHDVGDISLQSHSNLDFDESTSCADSPAISCVQLDVEIQPKSPGIDMNSEPAVAAVPDPVASKEQPVGTAPVTTGVNDVFWEQFLTENPGSHETQEAHSERKDSNGRSNEGKPGDLGRFWWNIRNVNNLPEQMGHS. 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04719 396 ProSitePatterns HSF-type DNA-binding domain signature. 53 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g04719 396 MobiDBLite consensus disorder prediction 107 127 - -
Seca6g04719 396 FunFam Heat shock transcription factor 1 7 104 - -
Seca6g04719 396 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 5 284 IPR027725 -
Seca6g04719 396 Pfam HSF-type DNA-binding 14 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g04719 396 MobiDBLite consensus disorder prediction 206 233 - -
Seca6g04719 396 SUPERFAMILY "Winged helix" DNA-binding domain 9 103 IPR036390 -
Seca6g04719 396 SMART hsfneu3 10 103 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g04719 396 MobiDBLite consensus disorder prediction 347 377 - -
Seca6g04719 396 MobiDBLite consensus disorder prediction 353 369 - -
Seca6g04719 396 Gene3D - 6 104 IPR036388 -
Seca6g04719 396 Coils Coil 125 159 - -
Seca6g04719 396 PRINTS Heat shock factor (HSF) domain signature 14 37 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g04719 396 PRINTS Heat shock factor (HSF) domain signature 65 77 IPR000232 GO:0003700|GO:0006355|GO:0043565
Seca6g04719 396 PRINTS Heat shock factor (HSF) domain signature 52 64 IPR000232 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04719 Seca-Chr6 114768752 114771502 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04719 7 395 HSF AT4G18880 54.000 1.39e-123 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Seca6g04719 HSF_DNA-bind 1.3e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04719 K09419 - gmx:100798004 607.446