Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04711 ATGGCTGATAATTCACCAAGCAATGGAAACCACCAAGTGGTTTTAAATGTAAACTGTGATGACGACTCAGGAATTGAAGACTGTGTGCCTCTTTTACAGAAGGTACCAGCTTATATAATAGCTCAGGTCCTTGGATCCACACTTGCAAGTGGAACTCTTAGACTTATATTCAATGGCAAGGAGAACCATTTTTCAGGAACACTCCCGGCTGGTTCTGACCTACAAGCTTTTGTGGTTGAATTCATAATCACTTTCTACCTCATGCCAATAACTGGAGCATCAATGAACCCAGCAAGAAGCTTAGGGCCTGCTATTGTGCACCATGAGTACAGAGGAATATGGATATATTTGGTGTCACCAATTTTGGGTGCAGTGGCAGGTACATGGGTGTACAACTTCATCAGCAATGGAAACCACGAGGTCGTTTTGAGTGTAAACGACAATGCCTCCAAAAAGTGCGACGACTCAGGCATCGAAGACTGCGTGCCTTTTTTGCAGAAGTTGGTAGCAGAGGTGGTGGGCACGTACTTGTTGATATTTACAGGTTGTGCTTCGGTGGTGGTGAATCTTAACAATGAAAAGGTGGTGACACTTCCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTATTGGCCTACTCTCTTGGTCACATCTCTGGTGCCCATTTCAACCCAGCTGTCACTATTGCTCATGCTTCCACCAAAAGGTTTCCCTTCAAACAGGTACCGGCTTATATAGTAGCTCAGGTCTTAGGATCCACACTCGCAAGTGGAACTCTTAGACTTATATTCAGTGGCAAAGAAAACCATTTTGCAGGAACACTCCCTGCTGAGGTGGTGGGCACGTACTTGTTGATATTTACAGGTTGTGCTTCGGTGGTGGTGAATCTTAACAATGAAAAGGTGGTGACACTTCCTGGGATTTCAATTGTTTGGGGACTCACTGTTATGGTATTGGCTTACTCTCTTGGTCACATCTCTGGTGCCCATTTCAACCCAGCTGTCACCATTGCTCATGCTTCCACCAAAAGGTTTCCCTTCAAACAGGTACCAGCTTATATAGTAGCTCAGGTCTTAGGATCCACACTCGCAAGTGGAACTCTTAGACTCATATTCAGTGGCAAGGAAAACCATTTTGCAGGAACACTCCCGGCTGGTTCTGACCTGCAAGCTTTTGTGGTTGAATTCATAATCACTTTCTACCTCATGTTCGTCGTTTCTGGAGTAGCCACCGATAACAGAGCGATTGGTGAATTGGCTGGGCTTGCAGTTGGGTCTACGGTGCTGCTAAATGTGTTGTTTGCCGGGCCAATCACTGGAGCATCAATGAACCCAGCAAGAAGCTTAGGCCCTGCAATTGTGCACCATGAGTACAGAGGAATATGGATATACATAGTGTCACCCATTTTGGAAGCTTTGGCAGGTACATGGGCCTACAGTTTCATAAGGTACACCAACAAGCCAGTTCGTGAGCTCACCAAGAGTGCATCTTTCCTCAAAGGAAAGGGATGTGAATGA 1521 0.4556 MADNSPSNGNHQVVLNVNCDDDSGIEDCVPLLQKVPAYIIAQVLGSTLASGTLRLIFNGKENHFSGTLPAGSDLQAFVVEFIITFYLMPITGASMNPARSLGPAIVHHEYRGIWIYLVSPILGAVAGTWVYNFISNGNHEVVLSVNDNASKKCDDSGIEDCVPFLQKLVAEVVGTYLLIFTGCASVVVNLNNEKVVTLPGISIVWGLTVMVLAYSLGHISGAHFNPAVTIAHASTKRFPFKQVPAYIVAQVLGSTLASGTLRLIFSGKENHFAGTLPAEVVGTYLLIFTGCASVVVNLNNEKVVTLPGISIVWGLTVMVLAYSLGHISGAHFNPAVTIAHASTKRFPFKQVPAYIVAQVLGSTLASGTLRLIFSGKENHFAGTLPAGSDLQAFVVEFIITFYLMFVVSGVATDNRAIGELAGLAVGSTVLLNVLFAGPITGASMNPARSLGPAIVHHEYRGIWIYIVSPILEALAGTWAYSFIRYTNKPVRELTKSASFLKGKGCE. 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04711 506 ProSitePatterns MIP family signature. 223 231 IPR022357 -
Seca6g04711 506 PANTHER AQUAPORIN NIP2-1 89 140 IPR034294 -
Seca6g04711 506 Pfam Major intrinsic protein 162 269 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 Pfam Major intrinsic protein 88 131 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 Pfam Major intrinsic protein 272 480 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 SUPERFAMILY Aquaporin-like 164 274 IPR023271 -
Seca6g04711 506 SUPERFAMILY Aquaporin-like 34 143 IPR023271 -
Seca6g04711 506 Gene3D Glycerol uptake facilitator protein. 30 87 IPR023271 -
Seca6g04711 506 Gene3D Glycerol uptake facilitator protein. 88 147 IPR023271 -
Seca6g04711 506 CDD MIP 278 483 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 Gene3D Glycerol uptake facilitator protein. 162 272 IPR023271 -
Seca6g04711 506 NCBIfam MIP family channel protein 278 480 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 PRINTS Major intrinsic protein family signature 463 483 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 PRINTS Major intrinsic protein family signature 395 413 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 PRINTS Major intrinsic protein family signature 274 293 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 PRINTS Major intrinsic protein family signature 426 448 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 PRINTS Major intrinsic protein family signature 313 337 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 PRINTS Major intrinsic protein family signature 350 369 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04711 506 Gene3D Glycerol uptake facilitator protein. 273 495 IPR023271 -
Seca6g04711 506 ProSitePatterns MIP family signature. 331 339 IPR022357 -
Seca6g04711 506 SUPERFAMILY Aquaporin-like 271 494 IPR023271 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04711 Seca-Chr6 114651668 114670850 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04711 276 501 Major Intrinsic Protein MIP AT5G37820 62.389 3.21e-93 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04711 K09874 - gmx:100812577 407.527