Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04710 ATGGATGATAATTCAGCAAGCGACGGAAACAACGCGGTGGTTTTCCATGTAAACGGTGATGATGCCTCCCAAAAGTCTGGAAAAGCAGACATCAAAGACTGTGTGCCTCTTTTGCAGAAGTTGGTAGCAGAGGCGGTGGGCACGTACATCATGATATTTGCAGGCTGTGGTGCGGTGATTGTGAACCTTAACAACGAGAGAGTGCTAACACTTTCTGGAATTGCAATTGTTTGGGGACTTACGGTTATGGTATTAGTTTACTCTCTTGGTCATATCTCTGGTGCTCATTTCAACCCAGCTGTCACCCTTGCTCTTTCTTCCACCAAAAGGTTTCCTTTCAAACAGGTACCAGGTTATATTATAAGTCAGGTGGTTGGATCCACACTTGCAAGTGGAACCCTGAGACTGATATTCAGGGGCAAGGATGACCATTTTGTAGGAACACTCCCCGCTGGTTCTAACCTGCAAGCTTTTGTGGTCGAATTCATTATCACTTTCTACCTCATGTTCGTTATTTCAGCAGTAGCCACCGATAACAGAGCCTTTGGTGAGTTGGCTGGGCTTGCAGTTGGGTCTACGGTACTGCTAAATGTGTTGTTGGCCGGGCCAATCACTGGAGCATCATTGAATCCAGCAAGAAGCTTAGGGCCTGCTGTTGTGCACCATGAGTACAGAGCATTGTGGATATATTTGGTATCACCAGTTCTTGGAGCTTTGGCTGGAACATGGGCCTACAATTTCATCAGGTGCACCAAAAAGCAGTGCGGGTGCTGA 774 0.4677 MDDNSASDGNNAVVFHVNGDDASQKSGKADIKDCVPLLQKLVAEAVGTYIMIFAGCGAVIVNLNNERVLTLSGIAIVWGLTVMVLVYSLGHISGAHFNPAVTLALSSTKRFPFKQVPGYIISQVVGSTLASGTLRLIFRGKDDHFVGTLPAGSNLQAFVVEFIITFYLMFVISAVATDNRAFGELAGLAVGSTVLLNVLLAGPITGASLNPARSLGPAVVHHEYRALWIYLVSPVLGALAGTWAYNFIRCTKKQCGC. 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04710 257 CDD MIP 39 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 Gene3D Glycerol uptake facilitator protein. 3 255 IPR023271 -
Seca6g04710 257 Pfam Major intrinsic protein 36 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 NCBIfam MIP family channel protein 43 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 SUPERFAMILY Aquaporin-like 36 252 IPR023271 -
Seca6g04710 257 PRINTS Major intrinsic protein family signature 115 134 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 PRINTS Major intrinsic protein family signature 160 178 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 PRINTS Major intrinsic protein family signature 78 102 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 PRINTS Major intrinsic protein family signature 191 213 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 PRINTS Major intrinsic protein family signature 228 248 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 PRINTS Major intrinsic protein family signature 39 58 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca6g04710 257 ProSitePatterns MIP family signature. 96 104 IPR022357 -
Seca6g04710 257 PANTHER AQUAPORIN NIP2-1 31 253 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04710 Seca-Chr6 114648503 114650669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04710 35 202 Major Intrinsic Protein MIP AT4G18910 74.286 4.21e-88 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04710 K09874 - gmx:100812577 392.119
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca12g05938 12 151185780 151193517 Seca6g04710 6 114648503 114650669 PCT