Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04706 ATGAAGGTTATCAACTTATTTGCCATCCTACTTATTGCACTAAGTTGCTTCCATTTGCTGAGAGTTTCCGCAGCAAAATTACCCCAACAAGAAGTTGATGCTCTTGAAGAAATTGTCAGTACAATGGGTGCAACCTATTGGAAATTTGATGCTGATTCGTGCAATATTGAAATGGTTGGACTAACGCAAGAACCACCTGCTGAATCAGAGAGAAGCATTCTTTGTGACTGCAGCTTTGAAAACAATAATGTCTGTCATGTTGTGAAGATGACCCTCAAGCGCCTTAGTCTTCCTGGCAGACTCCCACCTCAACTGTCTAAGCTACCTTTTCTCCAAGAAGTAGATTTTGCTTACAATTGCTTCATTGGTACAATTCCGAATGAATGGGCTTCAATGAAATTAACTTCAATCTCTCTTCTTGTGAATCGCTTATCGGGGGAAATTCCTAAGCATCTAGGAAACGTTACAACTCTCACATACCTGATGCTTGAAGCAAACCAATTTTCCGGGGTCGTCCCGCCTGAACTTGGGAGGCTGATCAACTTGCAGACCTTGGTGCTGTCATCCAATCAGCTAACTGGGAACTTACCACTGACACTTGCTGGATTACGAAATTTGACTGACTTTAGGATAAATAATAACAATTTTACTGGAACAATACCAAATTTCATACAGAACTGGCAACTTCTCCAAAGACTAGAAATGCATGCAAGTGGATTAGAGGGACCCATTCCATCCAATATATCTCTCTTGAAGAACTTAGTTCAGCTCACATATTTATACAGAAGAATCAGTGATATAAAAAGTCCTGGCCAAGATTTTCCTTTTCTGGGGAACATGGCAGCCCTGACTACATTGGTTTTAAGGAACTGTAACCTGTCTGGTGTGATACCTTCATACATCTGGAACATGGTGAATTTGGCAGTTTTGGATGTCAGCTTTAACAAGCTAGTTGGGGAAATTCCAGCAAATATGAATATAAGGCGTCTCAGATTTATCTACCTAACAGGTAATATGCTTAGTGGAAACATACCGCAATCAATCTTGAGGGATGGAAGTAGCATTGATCTTTCTTACAACAATTTTACTTGGCAAGACCCTGAGCAACCTGCTTGTCAGGACAACATGAACTTAAATCTGAATTTGTTCAGAAGCTCGCAGAAGGAGAACAAGTTAGAGGAATATGTTCCTTGCTCAAAGAATTTCAGGTGTCCACGGTATTCAAGTTGTTTACATGTTAATTGTGGCGGGAAGGATGTAAATGTAAAAGATGACAAAGGAGAAAACCTTTATGCGGGAGATGGACATGTTCCGGGTGGCACTGCAACCTATTTCTATAGTGATACTGATAACTGGGGATTTTGTAGCACTGGAGACTTCATGGATGATTTTGAGTCCCAGAACATACGTTACACTGCATCTCTTCCATCTTCAAATATGCCTGAATTATATACAACAGCACGTGTATCTCCAATTTCACTTACTTATTTCCATAATTGCATGGAAAATGGGAACTATACTGTACATCTTCACTTTGCTGAAATACAGTTTACAAATGATAATACATATAGAAGACTTGGGGAGCGCATATTTGATATCTATGTTCAGGATAAACTGATTCGGAAGAATTTTAATATAGAAAATGAAACAAAAGTTGCTGAAAAAACACTGGTACTGCCTATATATAATATCAGCGTCACAGATAATATCTTGGAGATTCGATTCTACTGGGCTGGCAAAGGGACTACAAGAATTCCTGATGTTGGAGTTTATGGTCCCCTTGTATCAGCATTGTCTGTTGTTTCTGATTCTAAACCTTGCTCAAATGGAGGAAAGACATTTGCTGTTTCCAAAATCATTGCAATTGTAGCTGGGGCTCTATGCTTAGTGCTTTTTATTTCTGGATTCTTTTGGTGGAAAGGCTTTTGCAGTGGAAAATTGCAAAAGAAAGGTACAAAAAATGGAGATATTCAGGCAGGTAATTTTAGCTTGGAGCAGATCAGAGCTGCCACAGATAACTTCTCTTCTGATAATAAGATCGGGGAAGGCGGTTTTGGCCCTGTATTCAAGGGTCAATTGACTGATGGTACTTTTATAGCAGTCAAACAACTATCATCAAAATCACGGCAGGGAAATCGTGAATTCATAAATGAAATAGGCTTGATATCTTGTTTGCAACACCCCAACCTTGTAAAGCTTCATGGATCTTGCACTGAAGGGGAACAACTTTTGTTGATATATGAGTACATGGAAAATAACAGCCTTGCCCAAGCTTTATTTGGTAGAGAAAACAAACAGCTTAAAATGGAATGGCCCACAAGGTTTAGGATTTGCATTGGCATAGCAAAAGGTTTAGCATTTCTCCATGAAGAGTCAAGATTCAAGATAGTTCACAGAGATATCAAGGCTTCTAACGTGTTACTTGACAAGGAATTAAATCCAAAAATATCTGACTTTGGCTTGGCTAAACTTGATGAAGTGGAGAAGACACATATCAGCACCCGAGTCGCTGGGACAATAGGATATATGGCACCAGAATATGCATTATGGGGCTATCTTACACACAAGGCTGATGTTTACAGTTTTGGAGTTGTGGCCTTAGAAATTGTTAGTGGGAAAAGCAATAACAATTATTTACCAGACGATGGAAGTGTTTGTCTTTTGGATTGGGCATGTAAGTTGCACGAAACTCAAAACTTAGTGAAGCTGATTGATGAAAGGTTGGTGCCAGATGTTAATATAATGGAAGCAGAAAAGGTTGTCAAAGTAGGTCTCCTGTGCACAAATGCTTCTCCATCACTTAGGCCTACAATGTCTGAGGTGGTGAATATGCTTGAAGGACAAGCAGTTATTTCTGATTCGATCCCGGAATCAAGTACCTACAATGAGGATTTAAGGTTTAAAGCCTTAAGAGACTTCCATCAACATCGGTCAAGCCAGAGTTTGAGTGGAAACCAGAGCCAATATTCAATGACAGTGCATACATTCAGCTCAACATCTGGTGGTAATACTTCCACAAGTTATATTGAGGATCATCCCTTAGTTGACAATAGCAGTGGTATCTCCTGA 3069 0.3956 MKVINLFAILLIALSCFHLLRVSAAKLPQQEVDALEEIVSTMGATYWKFDADSCNIEMVGLTQEPPAESERSILCDCSFENNNVCHVVKMTLKRLSLPGRLPPQLSKLPFLQEVDFAYNCFIGTIPNEWASMKLTSISLLVNRLSGEIPKHLGNVTTLTYLMLEANQFSGVVPPELGRLINLQTLVLSSNQLTGNLPLTLAGLRNLTDFRINNNNFTGTIPNFIQNWQLLQRLEMHASGLEGPIPSNISLLKNLVQLTYLYRRISDIKSPGQDFPFLGNMAALTTLVLRNCNLSGVIPSYIWNMVNLAVLDVSFNKLVGEIPANMNIRRLRFIYLTGNMLSGNIPQSILRDGSSIDLSYNNFTWQDPEQPACQDNMNLNLNLFRSSQKENKLEEYVPCSKNFRCPRYSSCLHVNCGGKDVNVKDDKGENLYAGDGHVPGGTATYFYSDTDNWGFCSTGDFMDDFESQNIRYTASLPSSNMPELYTTARVSPISLTYFHNCMENGNYTVHLHFAEIQFTNDNTYRRLGERIFDIYVQDKLIRKNFNIENETKVAEKTLVLPIYNISVTDNILEIRFYWAGKGTTRIPDVGVYGPLVSALSVVSDSKPCSNGGKTFAVSKIIAIVAGALCLVLFISGFFWWKGFCSGKLQKKGTKNGDIQAGNFSLEQIRAATDNFSSDNKIGEGGFGPVFKGQLTDGTFIAVKQLSSKSRQGNREFINEIGLISCLQHPNLVKLHGSCTEGEQLLLIYEYMENNSLAQALFGRENKQLKMEWPTRFRICIGIAKGLAFLHEESRFKIVHRDIKASNVLLDKELNPKISDFGLAKLDEVEKTHISTRVAGTIGYMAPEYALWGYLTHKADVYSFGVVALEIVSGKSNNNYLPDDGSVCLLDWACKLHETQNLVKLIDERLVPDVNIMEAEKVVKVGLLCTNASPSLRPTMSEVVNMLEGQAVISDSIPESSTYNEDLRFKALRDFHQHRSSQSLSGNQSQYSMTVHTFSSTSGGNTSTSYIEDHPLVDNSSGIS. 1023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04706 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 796 808 IPR008271 GO:0004672|GO:0006468
Seca6g04706 1022 Gene3D Ribonuclease Inhibitor 266 391 IPR032675 -
Seca6g04706 1022 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 644 749 - -
Seca6g04706 1022 Gene3D Ribonuclease Inhibitor 40 196 IPR032675 -
Seca6g04706 1022 SUPERFAMILY Protein kinase-like (PK-like) 660 946 IPR011009 -
Seca6g04706 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 17 981 - -
Seca6g04706 1022 SUPERFAMILY L domain-like 83 379 - -
Seca6g04706 1022 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 16 - -
Seca6g04706 1022 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 270 391 - -
Seca6g04706 1022 ProSiteProfiles Protein kinase domain profile. 674 951 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04706 1022 Pfam Protein tyrosine and serine/threonine kinase 677 945 IPR001245 GO:0004672|GO:0006468
Seca6g04706 1022 Pfam Malectin domain 410 598 IPR021720 -
Seca6g04706 1022 Gene3D Ribonuclease Inhibitor 197 265 IPR032675 -
Seca6g04706 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 197 268 - -
Seca6g04706 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase 750 957 - -
Seca6g04706 1022 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 408 603 - -
Seca6g04706 1022 Gene3D - 408 605 - -
Seca6g04706 1022 SMART serkin_6 674 945 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04706 1022 MobiDBLite consensus disorder prediction 994 1022 - -
Seca6g04706 1022 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 33 196 - -
Seca6g04706 1022 CDD STKc_IRAK 680 947 - -
Seca6g04706 1022 Gene3D Phosphorylase Kinase; domain 1 644 749 - -
Seca6g04706 1022 Gene3D Transferase(Phosphotransferase) domain 1 750 957 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04706 Seca-Chr6 114611884 114622825 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04706 4 840 Receptor kinase-like Gene Family AT1G29750 60.429 0.0 1040
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca6g04706 PK_Tyr_Ser-Thr 2.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04706 - - zju:107412400 1395.56