Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04679 ATGGGAGTACTTTTGCTAATTGTCTTTAGCACCTATGGACTTGCTATGTGGTATGGCTCCAAACTGATCATTGAGAAAGGATACAATGGTGGAGATGTTTTTAATATTATCATATCAATTAATACGGGTGGAATGTCACTTGGTCAAACGACCCCATGCCTAAATGCATTTGCAGCAGGCCAAGTAGCAGCATATAAGATGTTTGAGACAATTAAACGAAAACCAAAAATTGATGCTTATGACACTAATGGTGTTATCTTGGAAGACATAAAGGGGGATATAGAACTTAAGGATGTTTACTTCAAATACCCTGCAAGGCCAGATGTGCAAATCTTTGTTGGATTCTCATTCTATATTCCAAGTGGCACAACTGCTGCTTTAGTGGGTCAAAGTGGTAGTGGGAAGTCAACTATAATCAGTTTATTAGAAAGATTCTATGACCCTGATGCTGGAGAAGTACTTATTGATGGTGTTAATTTAAAGAATTTTCAAGTTAGATGGATAAGGGAACAAATTGGGCTTGTTGGTCAAGAACCTGTCCTATTTACAGCTAGTATCAAGGAGAACATTTCATATGGGAAAGAAGGTGCAACAGATGAGGAGATAACATCAGCAATAACACTTGCCAATGCCAAAAAGTTCATCGATAAGCTGCCTCAGGGCCTTGACACAATGGTAGGAGGGCATGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATTTTGAAGAACCCAAAAATCCTTCTTCTTGATGAAGCAACTAGTGCTTTGGATGCTGAGTCAGAACATATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTTGTTGTTGCACATCGTTTGACAACCATTAGAAATGCTGATACCATAGCAGTGGTTCATCAGGGGAAAATTGTGGAAAAAGGAACTCATGATGAGTTAATCAAGGATCCTGATGGTGCTTATTCTCAACTCATTCGTCTACAAGAAAGATCCATGGAAGCAGAAGGAAGCCATAATTCTGAAGCAAATGAGTCAAAGAAAAGTTTTAATTTAGATAATCAAATGACTAGATCTTCCACCCAAAGAACATCCTTTGCAAAATCAATAAGCCAAGGTTCATCAGGCAGTAGACACTCTTTCTCACATGGCTTTACTCTTCCTTATCAAATTGATGCAAATGAGTCTGGTGAAAGAGCTAATGGAGATGTTGAAAATAGTGAACTTGATAATGTGAAACATCAAAAGGGTTCTGTTAAACGTTTAGCCAAGTTAAATAAGCCTGAGGTTCCTGTATTACTACTTGGATCCATTGCTGCAGCAGTACATGGTGTTATTCTTCCTGTATTTGGCCTCCTACTTTCATCAGCTATTAATACATTCTATGAACCTGCAGAACAGCTTAGAAAAGATTCTAAGTTTTGGTCACTTGTAGATGTTGGTTTGGGTATAGTTACTCTAGTGGCTATACCAATGCAGAACTACTTATTTGGGATTGCTGGTGGAAAACTTATAGAAAGAATTCGTTTATTAACATTTAAAAAGGTTGTGCACCAAGAAATTAGTTGGTTTGATCAACCTTCAAATTCAAGGTATATCATGATTATGAAAGAGAAAATCATTGTCACATCACATGTTAATTCCTTCAACTCATCTAACTCAAAAGAAATAAACATCCTTGTAGTGGTGCAGTTAGTGCAAGGTTAG 1716 0.3759 MGVLLLIVFSTYGLAMWYGSKLIIEKGYNGGDVFNIIISINTGGMSLGQTTPCLNAFAAGQVAAYKMFETIKRKPKIDAYDTNGVILEDIKGDIELKDVYFKYPARPDVQIFVGFSFYIPSGTTAALVGQSGSGKSTIISLLERFYDPDAGEVLIDGVNLKNFQVRWIREQIGLVGQEPVLFTASIKENISYGKEGATDEEITSAITLANAKKFIDKLPQGLDTMVGGHGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESEHIVQEALERVMSKRTTVVVAHRLTTIRNADTIAVVHQGKIVEKGTHDELIKDPDGAYSQLIRLQERSMEAEGSHNSEANESKKSFNLDNQMTRSSTQRTSFAKSISQGSSGSRHSFSHGFTLPYQIDANESGERANGDVENSELDNVKHQKGSVKRLAKLNKPEVPVLLLGSIAAAVHGVILPVFGLLLSSAINTFYEPAEQLRKDSKFWSLVDVGLGIVTLVAIPMQNYLFGIAGGKLIERIRLLTFKKVVHQEISWFDQPSNSRYIMIMKEKIIVTSHVNSFNSSNSKEINILVVVQLVQG. 572
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04679 571 ProSitePatterns ABC transporters family signature. 233 247 IPR017871 GO:0005524|GO:0016887
Seca6g04679 571 SUPERFAMILY ABC transporter transmembrane region 2 78 IPR036640 GO:0005524|GO:0016020
Seca6g04679 571 Gene3D ABC transporter type 1, transmembrane domain 400 543 IPR036640 GO:0005524|GO:0016020
Seca6g04679 571 SMART AAA_5 121 307 IPR003593 GO:0016887
Seca6g04679 571 FunFam ABC transporter B family member 1 84 333 - -
Seca6g04679 571 PANTHER ABC TRANSPORTER B FAMILY 1 340 IPR039421 -
Seca6g04679 571 Gene3D ABC transporter type 1, transmembrane domain 1 355 IPR036640 GO:0005524|GO:0016020
Seca6g04679 571 SUPERFAMILY ABC transporter transmembrane region 419 537 IPR036640 GO:0005524|GO:0016020
Seca6g04679 571 MobiDBLite consensus disorder prediction 347 385 - -
Seca6g04679 571 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 437 536 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g04679 571 MobiDBLite consensus disorder prediction 335 385 - -
Seca6g04679 571 CDD ABC_MTABC3_MDL1_MDL2 94 332 - -
Seca6g04679 571 Gene3D - 84 333 IPR027417 -
Seca6g04679 571 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 83 332 IPR027417 -
Seca6g04679 571 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 94 330 IPR003439 GO:0005524
Seca6g04679 571 Pfam ABC transporter 115 261 IPR003439 GO:0005524
Seca6g04679 571 Pfam ABC transporter transmembrane region 437 532 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04679 Seca-Chr6 114318674 114324352 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04679 1 532 Calmodulin-binding Proteins AT2G36910 44.590 1.87e-137 429
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04679 K05658 - gmx:100792531 862.062