Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04678 ATGGCACACAACACTGAGGTGCCTCAGAAAGTTCCATTCTACAAGCTTTTCATTTTTGCTGATGGCCTTGACGTGACGTTGATGATCATTGGCACCATTTGTGCCATGGCAAATGGCTTATCGCAACCTCTCATGACCCTCATTCTTGGGAAGCTCATCAACGCCTTTGGCTCCAACGTTCCATCCCAAGTTGTTCATCAAGTTTCTAAGGTTGCACTATTATTTGTTTACTTGGGTGTTGGGTCTGGAATAGCATCATTTCTACAGGTATCATGTTGGATGGTGACAGGAGAAAGACAAGCCACACGAATCCGTGGCTTGTACTTGAAAACTATATTAAAACAAGACATTGCTTTCTTTGACACTGAAACAACAACTGGAGAGGTAATTGGGAGAATGTCTGGTGACACTATTCTCATTCAAGATTCCATGGGAGAAAAGGTTGGGAAGTTTATTCAACTTGCTTCAACTTTTTTTGGTGGCTTTGTGATTGCCTTTGTAAAAGGATGGCAACTCGCTCTGGTTTTGCTTTCATGTATACCATTGGTTATCATTGCTGGTGGATTCATGTCTGTGTTGATGTCTAGAATGTCAAGTCGTGGGCAAGCTGCTTATGCAGAAGCAGGAAATGTTGTTGAACAAATAGTGGGAGCCATTAGAACAGTTGCATCTTTTACTGGAGAGAAAAAAGCAATAGAAAAGTATAATATAAAGTTGAAAGTTGCTTACACTACAATGGTTCAACAAGGGATGGTCTCGGGGCTAGGAATGGGAGTGCTTATGATGATTATCTTTTGCACCTATGGACTTGCCATGTGGTATGGTTCCAAACTAGTCATTGAAAAAGGATACATTGGTGGAACTGTCATAACTGTAATCGTAGCTCTTATGACTGGAGGAATGTCACTGGGTCAGGCATCCCCATGTGTAAATGCATTTGCTACAGGTCAAGCAGCAGCATATAAGATGTTTGAGACAATTAAAAGAAAGCCCAAAATTGATGCTTATGACACCAGTGGTGTTATCTTGGAAGACATAAAGGGAGATATTGAGCTCAAAGATGTTCACTTCACATACCCTGCAAGGCCAGATGTGCAGATATTCACTGGATTCTCATTATTTGTTCCAAATGGCACAACTACTGCTTTAGTGGGTCAAAGTGGAAGTGGGAAGTCTACAGTAATCAGTTTATTAGAAAGATTCTATGATCCTGATGCTGGAGAAGTCCTTATAGATGGAGTAAATTTGAAGAGTTTGCAAGTTAGATGGATAAGAGAACAGATTGGGTTGGTTAGTCAAGAACCTATCCTATTTACAACCAGTATAAAAGAGAACATAGCTTATGGGAAAGAAGGTGCAACTGATGAGGAGATAGCAACAGCAATAACACTTGCCAATGCCAAAAAGTTCATTGACAAGCTGCCTCAGGGCCTTGACACAATGGCAGGGCAGAACGGGACTCAACTTTCTGGTGGGCAAAAGCAAAGAATTGCAATTGCAAGGGCAATATTGAAGAACCCAAAAATCCTCCTTCTTGATGAAGCAACTAGTGCTTTGGATGCTGAGTCAGAACGTATTGTTCAAGAAGCATTGGAAAGAGTTATGTCAAAAAGGACTACTGTAGTTGTTGCACATCGTTTGACAACCATTAGAAATGCTAATACCATAGCAGTGGTTCATCAGGGGAAGATTGTGGAAAAAGGAACTCATGATGAGTTAATCAAGGATGTTGATGGTGCTTATTCTCAACTTATTCGCCTACAAGAAGGAGAAAAAGAAGGTGAAGGTAGCCAGAAGAATGAAGCACATAAGTCTAGTAACAGCTTAATTTTAGATAGTCACATGACTAGATCAATAAGTAGAGGTTCATCAGGGAGTCGACACTCTCAGTCCCTTAGCTTTGCTCTTCCTTATCAAAGTGGTGGACAAACAGAAGAAGTGGATGTTGAACAAAGTCATGTTGATAATAAGAAGCCTAAAAGGGTTTCTATAAGACGTTTGGCATACCTGAATAAGCCTGAGGTTCTTGTCTTACTACTTGGATCCATTGCTGCAGCAATAAATGGTGTGGTGTTCCCTACATTTGGCCTCTTGTTTTCATCAGCCATTGCTATGTTCTTTAAACCTCCAGAACAACAGCAGAAAGATGCTAGGTTCTGGACACTTCTTTATGTGGGTTTAGGTTTAGTTACTCTAGTGGTTTTCCCACTCCAAAATTACTTCTTTGGGATTGCTGGTGGAAAACTAATAGAGAGAATTCGTTCCTTAACATTTGAGAAGGTTGTGCATCAAGAAATCAGTTGGTTTGATGACCCTGCAAATTCTAGTGGTGCAGTTGGTGCAAGGTTATCTACTGATGCTTCAACAGTGAAAAGTCTTGTTGGTGACACCTTGTCCCTCATGGTGCAAAACATATCAACAATCATAACAGGTCTAGTTATAGCATTCACTGCTAATTGGATTCTCGCTTTAATAATTCTGGCTGTGTCACCCATGGTCATTATGCAAGGATGTATTCAAATGAGGTTTCTTAAAGGATTCAGTGCTGATGCCAAGGTTAAGTATGAAGAGGCAAGTCAGGTGGCAACTGATGCTGTTGGTAGCATTAGAACTGTCGCATCATTTTGTGCAGAATCAAAGGTGATGGATATGTACAAGAAGAAATGTTCAAGGCCAGAAAAACAAGGTGTTCGGTTGGGGCTTGTTAGTGGTGCAGGACTTGGTTTCTCTTTTATGGCTCTATATTGCACAAATGCTTTTTGTTTCTACATAGGATCTGTTCTTGTGCGACACGGCCTTGCAACTTTTCCAGAGGTTTTCAGGGTTTTCTTTTGCATAACAATTACAGCAATTGGTGTTTCCCAGACAAATGCCTTAGCACCAGACACTAACAAGGCCAGAGATTCCGCAACTTCAATATTTGAAATTCTTGACAGCAAACCTATCATTGACTCAAGCAGCAATGAAGGTAGAACACTAGAAACAGTTACTGGCAATATTGAACTTCATCATGTCAACTTTAATTACCCAACAAGGCCTCATATTCAAATTCTTAGAGATTTGAGCTTAAAAATCCCATCTGGAAAGACTGTTGCCTTGGTTGGAGAAAGTGGTTGTGGAAAATCAACAATCATCAGCCTTTTGGAGAGGTTTTATAATCCTAGCTCTGGGCATATACTACTAGATGGTGTGGATATTAGAGAGTTCAGATTAAGTTGGTTGAGGCAACAAATGGGTTTGGTTGGTCAAGAGCCTATTCTTTTCAATGAAAGCATTCGTGCAAACATAGCTTATGGCAAAGAAGGAGGTGCTACAGAGGATGAGATAATTGCAGCAGCTCAAGCAGCCAATGCACACAGGTTCATAAGTTCTCTTCCAAATGGTTATGACACCACTGTTGGAGAAAGAGGTACACAACTATCAGGAGGGCAAAAGCAACGTATTGCCATTGCAAGAGCCATGCTAAAAGATCCTAAAGTCCTTTTACTTGATGAGGCAACTAGTGCACTTGATGCTGAGTCAGAGCGTGTAGTTCAAGAGGCTCTAGACAGAGTCAGTGTGGATAGAACTACTGTTGTGGTAGCTCACCGTCTTACAACAATTAGAGGGGCTGATATTATAGCAGTAATTAAAAATGGGGTGGTTGCTGAAAAGGGAAAGCATGATGTCTTGATCAAGATTACTGATGGGGCTTATGCTTCATTGGTTGCTTTATATTCTGGTGCAGCATAA 3732 0.4078 MAHNTEVPQKVPFYKLFIFADGLDVTLMIIGTICAMANGLSQPLMTLILGKLINAFGSNVPSQVVHQVSKVALLFVYLGVGSGIASFLQVSCWMVTGERQATRIRGLYLKTILKQDIAFFDTETTTGEVIGRMSGDTILIQDSMGEKVGKFIQLASTFFGGFVIAFVKGWQLALVLLSCIPLVIIAGGFMSVLMSRMSSRGQAAYAEAGNVVEQIVGAIRTVASFTGEKKAIEKYNIKLKVAYTTMVQQGMVSGLGMGVLMMIIFCTYGLAMWYGSKLVIEKGYIGGTVITVIVALMTGGMSLGQASPCVNAFATGQAAAYKMFETIKRKPKIDAYDTSGVILEDIKGDIELKDVHFTYPARPDVQIFTGFSLFVPNGTTTALVGQSGSGKSTVISLLERFYDPDAGEVLIDGVNLKSLQVRWIREQIGLVSQEPILFTTSIKENIAYGKEGATDEEIATAITLANAKKFIDKLPQGLDTMAGQNGTQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQEALERVMSKRTTVVVAHRLTTIRNANTIAVVHQGKIVEKGTHDELIKDVDGAYSQLIRLQEGEKEGEGSQKNEAHKSSNSLILDSHMTRSISRGSSGSRHSQSLSFALPYQSGGQTEEVDVEQSHVDNKKPKRVSIRRLAYLNKPEVLVLLLGSIAAAINGVVFPTFGLLFSSAIAMFFKPPEQQQKDARFWTLLYVGLGLVTLVVFPLQNYFFGIAGGKLIERIRSLTFEKVVHQEISWFDDPANSSGAVGARLSTDASTVKSLVGDTLSLMVQNISTIITGLVIAFTANWILALIILAVSPMVIMQGCIQMRFLKGFSADAKVKYEEASQVATDAVGSIRTVASFCAESKVMDMYKKKCSRPEKQGVRLGLVSGAGLGFSFMALYCTNAFCFYIGSVLVRHGLATFPEVFRVFFCITITAIGVSQTNALAPDTNKARDSATSIFEILDSKPIIDSSSNEGRTLETVTGNIELHHVNFNYPTRPHIQILRDLSLKIPSGKTVALVGESGCGKSTIISLLERFYNPSSGHILLDGVDIREFRLSWLRQQMGLVGQEPILFNESIRANIAYGKEGGATEDEIIAAAQAANAHRFISSLPNGYDTTVGERGTQLSGGQKQRIAIARAMLKDPKVLLLDEATSALDAESERVVQEALDRVSVDRTTVVVAHRLTTIRGADIIAVIKNGVVAEKGKHDVLIKITDGAYASLVALYSGAA. 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04678 1243 Pfam ABC transporter 371 517 IPR003439 GO:0005524
Seca6g04678 1243 FunFam ABC transporter B family member 1 658 966 - -
Seca6g04678 1243 CDD ABC_MTABC3_MDL1_MDL2 350 588 - -
Seca6g04678 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1000 1237 IPR003439 GO:0005524
Seca6g04678 1243 SUPERFAMILY ABC transporter transmembrane region 25 334 IPR036640 GO:0005524|GO:0016020
Seca6g04678 1243 CDD ABC_6TM_Pgp_ABCB1_D1_like 28 323 - -
Seca6g04678 1243 Pfam ABC transporter 1018 1168 IPR003439 GO:0005524
Seca6g04678 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 679 965 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g04678 1243 Gene3D - 348 601 IPR027417 -
Seca6g04678 1243 PANTHER ABC TRANSPORTER B FAMILY 3 589 IPR039421 -
Seca6g04678 1243 Gene3D - 990 1241 IPR027417 -
Seca6g04678 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 990 1237 IPR027417 -
Seca6g04678 1243 SUPERFAMILY ABC transporter transmembrane region 659 981 IPR036640 GO:0005524|GO:0016020
Seca6g04678 1243 FunFam ABC transporter B family member 1 990 1240 - -
Seca6g04678 1243 ProSitePatterns ABC transporters family signature. 489 503 IPR017871 GO:0005524|GO:0016887
Seca6g04678 1243 Gene3D ABC transporter type 1, transmembrane domain 73 974 IPR036640 GO:0005524|GO:0016020
Seca6g04678 1243 MobiDBLite consensus disorder prediction 590 610 - -
Seca6g04678 1243 FunFam ABC transporter B family member 9 15 345 - -
Seca6g04678 1243 CDD ABC_MTABC3_MDL1_MDL2 1000 1236 - -
Seca6g04678 1243 Pfam ABC transporter transmembrane region 679 950 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g04678 1243 Pfam ABC transporter transmembrane region 28 299 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g04678 1243 SMART AAA_5 377 569 IPR003593 GO:0016887
Seca6g04678 1243 SMART AAA_5 1027 1214 IPR003593 GO:0016887
Seca6g04678 1243 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 29 315 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Seca6g04678 1243 CDD ABC_6TM_Pgp_ABCB1_D2_like 668 983 - -
Seca6g04678 1243 ProSitePatterns ABC transporters family signature. 1140 1154 IPR017871 GO:0005524|GO:0016887
Seca6g04678 1243 FunFam ABC transporter B family member 1 340 589 - -
Seca6g04678 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 340 588 IPR027417 -
Seca6g04678 1243 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 350 586 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04678 Seca-Chr6 114307003 114311993 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04678 6 1238 Calmodulin-binding Proteins AT2G36910 45.883 0.0 1078
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04678 K05658 - gmx:100801771 1956.41