Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04671 ATGATGGAACTAAAGTGCATTTTCTTCAATAGGAATGAAAAGAACCAATTGCTTCTTGGCATTCGCCGTGCTAATCGACCACAAACTGTGATGCCTTCATCAGTGTTGTCAAGTGATAGTATGCACTTGGGGCTTCTTGCTGCGGCAGCTCATGCAGCTGCAACGAATAGTCGATTCACCATTTTCTATAATCCACGTGCTAGCCCATCCGAATTTGTCATTCCCTTAGCAAAGTATGTTAAAGCTGTGTATCATACTCGAGTTTCAGTTGGTATGCGTTTCAGGATGCTGTTTGAAACAGAGGAGTCTAGTGTGCGACGATACATGGGTACAATAACTGGCATTAGTGACCTGGATCCTGTTCGGTGGCCGAATTCACATTGGCGCTCAGTGAAGGTTGGGTGGGATGAATCCACTGCAGGAGAGAGGCAACCTAGAGTGTCTTTATGGGAAATTGAGCCATTAACAACATTTCCTATGTATCCATCTCCATTCCCCCTTAGGCTTAAACGACCATGGCCTCCGGGATTGCCCTCATTCCATGGCATGAAGGATGATGATTTTGGCCTAAATTCTCCTCTGTTGTGGCTCCGAGACACTGATAGAGGCCTTCAGTCTCTTAATTTTCAGGGTATTGGGGTTAATCCTTGGATGCAGCCAAGGTTTGATTCTTCCATGCTGAATATGCAACCAGATATGTATCAAGCTGTGGCTGCTGCTGCACTACAGGACATGAGGAGTATAGACCCTTCCAAACAGCATCCTGGTTCCTTACTGCAATTTCAGCAACCACAGAACATCCCAAACAGGACTGCTGCCCTGATGCAGGCCCAGATGTTGCAACAGTCACAGCCTCAACAGGTTTTTCAAAATAATCAGGAGAATCAACATTCCTCGCAATCCCAGCAACAAACTCAGACTCATCTTCAACAACATCTACAGCAACAACATCATCACAACCACCAGCAGCAGCACCAACAACAAACGCAACAGCAAGTGGTAGATAATCAGCAGATTTCCAATGTAGTCTCTACAATGTCTCCATTTGTTTCAGCACCTCAACCTCAATCATCACCTATGCAAGCTCTCTCTTCACTGTGTCAACAGCAAAGTTTTTCAGATTCAAATGGGAATACTGTGACTACTGCTATTTCTCCCCTGCACAGTATCTTGGGTTCATTTCCCCAGGATGAAACATCCCACCTTCTGAATCTCCCTAGAACAAGCTCTTGGGTTCCTGTTCAAAACTCAACTGGATGGCCCTCCAAGCGTGTTGCTGTGGATCCTCTCCTTTCTTCGGGAGCATCTCAATGCGTTCTGCCTCAAGTAGAGCAGTTAGGGCAGCCACAGAGTAGCATAACTCAAAATGCTATTACATTGCCACCATTTCCTGGTAGGGAATGTTCAATAGACCAAGAAGGGAGCAATGATCAACAAAACCATCTTTTATTTGGTGTTAATATAGAGCCCTCATCTCTTCTAATGCATAATGGGATGTCAAGCCTTAAGGGGATTAGCAGCAACAGTGACTCCTCAACCTTGCCCTATCAATCTTCTAATTGCCTGAATACCACAGGCACTGACTCTTCATTGAATCATGGAATGACACATAGCATGGGTGAATCGGGCTTTCTGCAGACACCAGAAAATGCGGGGCAGGGAAACTCACCAAACAAGACCTTTGTTAAGGTTTATAAATCAGGGTCCTTTGGAAGATCACTGGATATTACTAAATTCAGCAGCTACCATGAGCTGCGCAGTGAGCTCGCTCAAATGTTTGGCCTTGAAGGCGAGTTGGAGGACCCCCTGAGATCAGGCTGGCAGCTTGTATTCGTGGACCGAGAGAATGATGTTCTTCTCCTCGGTGATGGCCCCTGGCCGGAATTTGTGAATAGTGTATGGTGCATCAAGATACTTTCGCCTCAGGAAGTGCAGCAAATGGGCAACACCGGCCTCGAGCTATTGAACTCGGTTCCAATTCAAAGGCTCTCTAATGGCATCTGTGATGACTATGTGAGCCGTCAAGACCCAAGAAATTTAAGCACTGGGATAACAACTGTGGGGTCTTTAGACTACTGA 2079 0.4589 MMELKCIFFNRNEKNQLLLGIRRANRPQTVMPSSVLSSDSMHLGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLKRPWPPGLPSFHGMKDDDFGLNSPLLWLRDTDRGLQSLNFQGIGVNPWMQPRFDSSMLNMQPDMYQAVAAAALQDMRSIDPSKQHPGSLLQFQQPQNIPNRTAALMQAQMLQQSQPQQVFQNNQENQHSSQSQQQTQTHLQQHLQQQHHHNHQQQHQQQTQQQVVDNQQISNVVSTMSPFVSAPQPQSSPMQALSSLCQQQSFSDSNGNTVTTAISPLHSILGSFPQDETSHLLNLPRTSSWVPVQNSTGWPSKRVAVDPLLSSGASQCVLPQVEQLGQPQSSITQNAITLPPFPGRECSIDQEGSNDQQNHLLFGVNIEPSSLLMHNGMSSLKGISSNSDSSTLPYQSSNCLNTTGTDSSLNHGMTHSMGESGFLQTPENAGQGNSPNKTFVKVYKSGSFGRSLDITKFSSYHELRSELAQMFGLEGELEDPLRSGWQLVFVDRENDVLLLGDGPWPEFVNSVWCIKILSPQEVQQMGNTGLELLNSVPIQRLSNGICDDYVSRQDPRNLSTGITTVGSLDY. 693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04671 692 Gene3D - 555 648 - -
Seca6g04671 692 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 7 648 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca6g04671 692 MobiDBLite consensus disorder prediction 532 558 - -
Seca6g04671 692 MobiDBLite consensus disorder prediction 320 334 - -
Seca6g04671 692 FunFam Auxin response factor 554 648 - -
Seca6g04671 692 Pfam AUX/IAA family 549 644 IPR033389 -
Seca6g04671 692 MobiDBLite consensus disorder prediction 277 313 - -
Seca6g04671 692 Gene3D - 87 159 - -
Seca6g04671 692 Pfam Auxin response factor 49 132 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca6g04671 692 FunFam Auxin response factor 87 159 - -
Seca6g04671 692 SUPERFAMILY CAD & PB1 domains 553 634 - -
Seca6g04671 692 ProSiteProfiles PB1 domain profile. 559 643 IPR000270 GO:0005515
Seca6g04671 692 MobiDBLite consensus disorder prediction 277 334 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04671 Seca-Chr6 114250600 114254029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04671 6 651 B3 DNA Binding Superfamily AT5G37020 48.571 5.95e-162 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04671 - - gmx:100798719 1110.9