Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04670 ATGAGGCTTTCTTCATCTGGTTTTAGTCCTCCACCCCAGGAAGGGGAAAGGCGAGTTCTAGATTCAGAACTTTGGCATGCATGTGCTGGTCCCCTTGTCTCCTTACCGGCAGTTGGAAGTCGCGTTGTATACTTCCCACAAGGTCACAGTGAACAGGTGGCCGTGTCAACCAACAAGGAAGTGGATGCCCATATTCCAAATTATCCGAGCTTACCACCTCAACTCATTTGTCAACTTCATAATCTGACTATGCATGCTGATGCTGAGACTGATGAAGTGTATGCACAGATGACCTTGCAACCTCTGAATCCACAAGAGCAAAAGGAGGCATACCTTCCAGCTGAGTTGGGTACTCCAAGTAAACAGCCAACAAACTACTTCTGCAAGACTTTGACTGCTAGTGACACAAGCACTCATGGGGGATTCTCTGTGCCTCGCCGGGCAGCTGAAAAAGTCTTTCCTCCATTGGACTTCTCCCAACAGCCTCCTGCTCAAGAGTTGATTGCAAGGGATTTGCATGGTAATGAATGGAAATTCAGACATATCTTCCGGGGTCAGCCCAAAAGACATCTACTTACTACTGGATGGAGTGTCTTTGTGAGTGCTAAAAGACTAATTGCTGGTGATTCTGTGCTGTTTATCTGGCAAGTGATTTTATTGCTTCCTGCTCATCAAAATGGCATGCTGCTATGTTCTGGACTGCATTAA 708 0.4647 MRLSSSGFSPPPQEGERRVLDSELWHACAGPLVSLPAVGSRVVYFPQGHSEQVAVSTNKEVDAHIPNYPSLPPQLICQLHNLTMHADAETDEVYAQMTLQPLNPQEQKEAYLPAELGTPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLIAGDSVLFIWQVILLLPAHQNGMLLCSGLH. 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04670 235 SMART B3_2 127 228 IPR003340 GO:0003677
Seca6g04670 235 FunFam Auxin response factor 125 220 - -
Seca6g04670 235 CDD B3_DNA 126 215 IPR003340 GO:0003677
Seca6g04670 235 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 214 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca6g04670 235 ProSiteProfiles B3 DNA-binding domain profile. 127 235 IPR003340 GO:0003677
Seca6g04670 235 Pfam B3 DNA binding domain 127 213 IPR003340 GO:0003677
Seca6g04670 235 SUPERFAMILY DNA-binding pseudobarrel domain 112 217 IPR015300 -
Seca6g04670 235 Gene3D - 125 230 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04670 Seca-Chr6 114247257 114250348 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04670 1 216 B3 DNA Binding Superfamily AT1G30330 89.450 6.26e-139 410
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca6g04670 B3 6.2e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04670 - - gmx:100798719 443.351