Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04657 ATGGGGGATCTGGAGAGAATGGGCAGAGAACTCAAATGTCCCATCTGTTTGAGTTTGTTCAATTCTGCAGTCTCACTCACCTGCAATCATCTTTTCTGCAACGCATGTATATTCAAGTCCATGAAATCAGCCTCTGCTTGTCCTGTCTGTAAAATACCATTCACTCGTCGAGAGGTTCGCCCTGCTCCTCACATGGACAACTTGGTCAGTATCTACAAAAACATGGAAGCCGCTTCTGGAATTAGTATATTTGTCACTCAGAATGCACCTATTACCAAATCTTCAGATGCAGAAAAGCAGTGTGAAGGTGATCCTGACACTGGTAAGGAGGAAGCTGGTGGGACTCATGAAAATCATGCACAGGAGAAAAAAACACTGAAGAGAAAGAAGTCAAGGAAGAAGATTAAGACCAGTGCAAACAGTTCAGGTTCTGATTTTGCAAAACCTTCCTTTCCCGCTAAGAAAAGGGTCCAGGTGCCACAAAATCTTCTTTCTGAAACTCCATTAAAGAATTTGAAACTTGGAGACTCTCGTAGTGAAATTAACAGTGAGGGGACAGAAAAGGCTTCAGTCATGGTAAATGAAAGGCCTCTCCAGAGAGAAAAAGATGATCATGTTCATTCACCTTTCTTTTGGTTAAGAGATGAGGAAGATGGTGGAAAGTTTAGTCAGCGCACTAGTGAGGATCAACTTATTGATGGCTCAACACCAATTCCTCCTTCATTCAGTGATCTTAAAGACTCTGATGATGAAAACCCTTCTAAAGTGTCTCCATCAGATGAGGTGCAAAATAAAGCTGCTGTTAATTTATTTGATAGTGAGATGTTTGAATGGACACAAAGGCCATGCTCCCCTGAATTATTTTCAAGTCCCATCAAAATGCAGGTGGAGGATACTTGTGAGAGTGATGAAAATCGAGAGGAATTTGTAGCAGCCTCACGAGGGCTGAAAACAAATCAGTTAAGTGCTGCTGCTGGCAATACAATATTTGAGAATTCCAGAGAAGGAAATAAATTGGCTGATGTGTTACCAAGTGTGTCTTCTCCTCAACTTAGAAGTTCTGATGATCTAAATGGAAAAAAGAAGTCTACAAAGAGAGTCAGAAAAACTAAGGACAAGGCTAGGAAAGAGAAGATTGGGGAACAAAACGATCAAATTAATGGAATGGATGTTGATTCAAATATGTCATTAAAAGTCATTAAGGAACAAGCATCAGACTATAAGCGGAAATCTTCTTATTTGGGAAAGACTAATAGAAGGGGCAAGAGGGTTTGTTTCAATACCAGTACAAATGCAACCCCTCAACCTGCTTGTCCAGTCTCTAATGTATTAGGAGTTCTAACCAGTGATGAAATGAAGATGGCTAAGAAATTGCGTACTTCACCATGTATACAAGAAAATGAGAAGCATTGTCCTCAGAAGATTGCTGGAAAAAGCCAGAGGAAAAGATCTGGAAAACAAAAGCTGGATGTGCAGGATCTAGCTGAAGGTTTATCCTCAATGCAAAACCAAACCAATGAGTTTGCTGGTTCTGCTTCATCCATTTTAAGTCTGCAGATGGATAATAATGGCAAGGCCTCTAATAGCAGGCAAAGCAAAAGCAACCTCTCCAGTAAAACGATGTCTTGCAATAGAGAATTGAGGACGACTAAAAGATCAAAACTTTCCTCTGATTGTATCTCTAATGCTATAAGTGGTGAAGAAATTCAACCTAATGAAAGTATTCAGCAAGGTCCCAATGGTGGGGCTTTGAATGACAAATCAAAAGAGAAGCATTGTCATTTGGTAGATGAACCGGTTTTAAGGAAATGCGAGAGCCATGTCAAAAAGTATCAATGTGCTTTCTGTCTTTCATCAGAGGAATCGGAGGCTTCTGGCCCGATGGTACATTACTTTGGTAGCAAGCCTGTAACTGCAGATTATGAAGGAGGATCTAAAGTCACACATTGTCACAGGAACTGCACAGAATGGGCCCCCAATGTATATTTCGAAGATGATAATGCAATAAATCTTGAAGCTGAAATAAGTAGAAGTCGGAGAATTAAATGTAGTTTTTGTGGATTTAAAGGGGCTGCGCTCGGTTGCTATGAGAAAAGTTGTCGCAGGAGCTTTCATGTTACTTGCGCCAAGTGGACTTCTCAATGTCGATGGGATATGGAAAACTTCGTCATGTTATGCCCTCTACACGCTTCCTCCGTGTTGCCCTATGAAAGTTCAGGATCCAAACAAAGGAGCAATAAATGCACAGCAGGGGAAGGTAAAAGCCGTAGTCGCAAAAATGACACTAGAAGCCAAAGTCGGATTGCTCATGGATCCTTCAAGAAAGTTGTACTTTGTTGTTCTGCTCTATCAGTACAAGAGAGGGGTGTTGTTTCCGAATTTGAAAGAGTATACAAGGTTACAGTTTTGAAAAATTGGGATTCAAGTGTCACCCATGTTATAGCATCAACAGATGAAAATGGGGCATACAGAAGGACCCTCAAAGTATTGTTGGGTATCCTGGAGGGAAAGTGGATTCTCAACATTGAGTGGATCAAAGCTTGCATGAAGGAAATGGAACCTGTTGGCGAAGAGCGTTTTGAAATTAAAGTTGACGTCCATGGAATCAAGGATGGGCCTCGTCTTGGACGACTAAGAGCATTGAACAAGCAACCAAAGCTTTTTGACGGCTACAAGTTCTATTTCATGGGAGATTTTATAGCATCATACAAGGGCTATCTGCAAGATCTTGTGACCGCTGCTGGAGGGATAGTGCTGCATAGGAAGCCAGTGTCTGGTGACCAAAAAGCTATATCACCTGATATGCATCCATACCAAACCCTCATAATTTTCAGTCTTGAGCTTCCTGATAAATGCAATCCTTCTGAAATGGATACAGTTTTCAGCCAAAGGCGATGTGATGCAGAGGTTCTGGCAAGTTCTACAGGTTCAAAGGTTGCAAGTAATACATGGATTCTGAACTCAATTGCAGCCTGCAAGTTGCAAAGCCTTGCTCAGTGA 3000 0.413 MGDLERMGRELKCPICLSLFNSAVSLTCNHLFCNACIFKSMKSASACPVCKIPFTRREVRPAPHMDNLVSIYKNMEAASGISIFVTQNAPITKSSDAEKQCEGDPDTGKEEAGGTHENHAQEKKTLKRKKSRKKIKTSANSSGSDFAKPSFPAKKRVQVPQNLLSETPLKNLKLGDSRSEINSEGTEKASVMVNERPLQREKDDHVHSPFFWLRDEEDGGKFSQRTSEDQLIDGSTPIPPSFSDLKDSDDENPSKVSPSDEVQNKAAVNLFDSEMFEWTQRPCSPELFSSPIKMQVEDTCESDENREEFVAASRGLKTNQLSAAAGNTIFENSREGNKLADVLPSVSSPQLRSSDDLNGKKKSTKRVRKTKDKARKEKIGEQNDQINGMDVDSNMSLKVIKEQASDYKRKSSYLGKTNRRGKRVCFNTSTNATPQPACPVSNVLGVLTSDEMKMAKKLRTSPCIQENEKHCPQKIAGKSQRKRSGKQKLDVQDLAEGLSSMQNQTNEFAGSASSILSLQMDNNGKASNSRQSKSNLSSKTMSCNRELRTTKRSKLSSDCISNAISGEEIQPNESIQQGPNGGALNDKSKEKHCHLVDEPVLRKCESHVKKYQCAFCLSSEESEASGPMVHYFGSKPVTADYEGGSKVTHCHRNCTEWAPNVYFEDDNAINLEAEISRSRRIKCSFCGFKGAALGCYEKSCRRSFHVTCAKWTSQCRWDMENFVMLCPLHASSVLPYESSGSKQRSNKCTAGEGKSRSRKNDTRSQSRIAHGSFKKVVLCCSALSVQERGVVSEFERVYKVTVLKNWDSSVTHVIASTDENGAYRRTLKVLLGILEGKWILNIEWIKACMKEMEPVGEERFEIKVDVHGIKDGPRLGRLRALNKQPKLFDGYKFYFMGDFIASYKGYLQDLVTAAGGIVLHRKPVSGDQKAISPDMHPYQTLIIFSLELPDKCNPSEMDTVFSQRRCDAEVLASSTGSKVASNTWILNSIAACKLQSLAQ. 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04657 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 81 IPR013083 -
Seca6g04657 999 Gene3D BRCT domain 773 878 IPR036420 -
Seca6g04657 999 FunFam Breast cancer associated RING 1 607 732 - -
Seca6g04657 999 ProSiteProfiles BRCT domain profile. 883 999 IPR001357 -
Seca6g04657 999 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 607 732 IPR013083 -
Seca6g04657 999 MobiDBLite consensus disorder prediction 342 389 - -
Seca6g04657 999 Pfam PHD-like zinc-binding domain 651 729 - -
Seca6g04657 999 SUPERFAMILY BRCT domain 887 997 IPR036420 -
Seca6g04657 999 SMART ring_2 13 50 IPR001841 -
Seca6g04657 999 SMART ring_2 683 729 IPR001841 -
Seca6g04657 999 ProSitePatterns Zinc finger RING-type signature. 28 37 IPR017907 -
Seca6g04657 999 SUPERFAMILY RING/U-box 4 74 - -
Seca6g04657 999 SMART BRCT_7 770 852 IPR001357 -
Seca6g04657 999 SMART BRCT_7 885 992 IPR001357 -
Seca6g04657 999 PANTHER BREAST CANCER TYPE 1 SUSCEPTIBILITY PROTEIN BRCA1 2 996 IPR031099 GO:0006281|GO:0006974
Seca6g04657 999 MobiDBLite consensus disorder prediction 94 191 - -
Seca6g04657 999 MobiDBLite consensus disorder prediction 522 544 - -
Seca6g04657 999 ProSiteProfiles BRCT domain profile. 801 862 IPR001357 -
Seca6g04657 999 SUPERFAMILY BRCT domain 775 871 IPR036420 -
Seca6g04657 999 MobiDBLite consensus disorder prediction 97 124 - -
Seca6g04657 999 CDD ePHD 613 729 - -
Seca6g04657 999 CDD BRCT_Bard1_rpt1 776 855 - -
Seca6g04657 999 FunFam Breast cancer associated RING 1 1 83 - -
Seca6g04657 999 MobiDBLite consensus disorder prediction 749 765 - -
Seca6g04657 999 SMART PHD_3 682 730 IPR001965 -
Seca6g04657 999 MobiDBLite consensus disorder prediction 219 261 - -
Seca6g04657 999 MobiDBLite consensus disorder prediction 736 766 - -
Seca6g04657 999 MobiDBLite consensus disorder prediction 522 550 - -
Seca6g04657 999 Gene3D BRCT domain 884 992 IPR036420 -
Seca6g04657 999 Pfam BRCA1 C Terminus (BRCT) domain 801 849 IPR001357 -
Seca6g04657 999 ProSiteProfiles Extended PHD (ePHD) domain profile. 610 730 IPR034732 -
Seca6g04657 999 FunFam Breast cancer type 1 susceptibility protein homolog 773 879 - -
Seca6g04657 999 Pfam Zinc finger, C3HC4 type (RING finger) 12 50 - -
Seca6g04657 999 FunFam Protein BREAST CANCER SUSCEPTIBILITY 1 like 884 992 - -
Seca6g04657 999 ProSiteProfiles Zinc finger RING-type profile. 13 51 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04657 Seca-Chr6 114130428 114136152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04657 8 63 RAD5 or RAD16-like Gene Family AT5G05130 35.088 1.08e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04657 K10683 - gmx:100804958 1445.64