Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04653 ATGTTAGAGGGTGCTGGTAGCGAGCGTGATTCTGGAATGAGCTTGGAGACTCTGAATTCTTCCACGCAGCGAACTTCAATGAGCAGCGGCACTGAAAGCATTTGCAGCACCAGTTTCAGCCGTCTCTCCTTTGACCTTCTTCCTACCTCCTCGCCGGAGAGTCTCTCCGTCAAACCTCACCGTTCCTCCGACTTCGCCTACTCCGCCATCCGCTCCGCCACCTTCGGCCGCAAGTCCGGCCTCACCTTCCGCGACTTCCACCTCCTCCGCCGAATCGGCTCAGGCGACATCGGCACCGTATACCTCTGCCGCCTCCGCGACGGCGTCGCCCATGACTTCGACGACGATCCAGCGTGCTTCTACGCCATGAAGGTGGTCGATAAGGAAGCCGTAGCACTCAAGAAGAAGTCGCAGAGAGCAGAAATGGAAAGGAAGATTCTCAAAATGCTCGACCATCCTTTCCTCCCTACGCTTTACGCAGAGTTTGAAGCCTCTCATTTCTCTTGCATTGTCATGGAGTATTGTTCCGGTGGAGACTTGCACTCCCTTCGACACCACCACGCTAACAATCGCTTCTCTCTCTCCTCTGCAAGGTTTTACGCGGCTGAAGTACTGGTGGCGTTGGAGTACCTGCACATGCTGGGAATCATCTACAGGGATCTAAAGCCAGAAAACGTGTTGGTCAGATCAGACGGTCACATCATGCTCTCTGATTTTGATCTTTCTTTATGTTCTGATGCAATCCCAGCCGTTGAATCCCCAGATTGTTCCCCAGATGATGCTGCATTCACACCTTCGTTGCCCTACACCCGCCCGCACCCCACCCCTTTCGCCTGCCTCTCGAAACGAATCTTCCGGTCCAGAAAGGTACAAACCCTTCAACCGAATCGGCTCTTTGTGGCCGAACCGGTTGGGGCCAGGTCGTGTTCGTTTGTGGGGACCCACGAGTACGTGTCGCCGGAGGTGGCTTCCGGTAACTCGCACGGCAACGCCGTGGACTGGTGGTCCTTCGGGATATTCATCTACGAGATGGTGTACGGTCGTACACCGTTCGCGGGTCCATCCAACGAGGCTACGCTGCGTAACATCATAAAAAAGCCCCTTACCTTCCCTACCGCCACGCCCTCCAGCACGCTTGAAATGCACGCGCGGGACCTCATATCCGGATTGCTTAACAAGGACCCGAACCGTAGGCTCGGGTCGAAGCGGGGCGCTGCAGACGTCAAAAAGCACCCGTTCTTTGCAGGGTTTAACCTGGCCCTTATACGTATGGTCACACCGCCGGAGGTGCCGTCCCTCAGAAAGCAGAAAACGACGCCGGTTTTCCACGCGAAAGATAACAACGGTAACAGAGATAGCAATAGACAGCATCCTACGGCGTCGTTTGATTACTTTTGA 1398 0.5508 MLEGAGSERDSGMSLETLNSSTQRTSMSSGTESICSTSFSRLSFDLLPTSSPESLSVKPHRSSDFAYSAIRSATFGRKSGLTFRDFHLLRRIGSGDIGTVYLCRLRDGVAHDFDDDPACFYAMKVVDKEAVALKKKSQRAEMERKILKMLDHPFLPTLYAEFEASHFSCIVMEYCSGGDLHSLRHHHANNRFSLSSARFYAAEVLVALEYLHMLGIIYRDLKPENVLVRSDGHIMLSDFDLSLCSDAIPAVESPDCSPDDAAFTPSLPYTRPHPTPFACLSKRIFRSRKVQTLQPNRLFVAEPVGARSCSFVGTHEYVSPEVASGNSHGNAVDWWSFGIFIYEMVYGRTPFAGPSNEATLRNIIKKPLTFPTATPSSTLEMHARDLISGLLNKDPNRRLGSKRGAADVKKHPFFAGFNLALIRMVTPPEVPSLRKQKTTPVFHAKDNNGNRDSNRQHPTASFDYF. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04653 465 SMART serkin_6 86 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04653 465 FunFam serine/threonine-protein kinase D6PK-like 306 432 - -
Seca6g04653 465 SUPERFAMILY Protein kinase-like (PK-like) 69 437 IPR011009 -
Seca6g04653 465 MobiDBLite consensus disorder prediction 442 465 - -
Seca6g04653 465 MobiDBLite consensus disorder prediction 430 465 - -
Seca6g04653 465 Pfam Protein kinase domain 309 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04653 465 Pfam Protein kinase domain 86 242 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04653 465 Gene3D Transferase(Phosphotransferase) domain 1 179 242 - -
Seca6g04653 465 Gene3D Transferase(Phosphotransferase) domain 1 307 432 - -
Seca6g04653 465 PANTHER FLIPPASE KINASE 1-RELATED 21 434 - -
Seca6g04653 465 CDD STKc_phototropin_like 84 434 - -
Seca6g04653 465 Gene3D Phosphorylase Kinase; domain 1 433 442 - -
Seca6g04653 465 Gene3D Phosphorylase Kinase; domain 1 85 178 - -
Seca6g04653 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 216 228 IPR008271 GO:0004672|GO:0006468
Seca6g04653 465 FunFam protein kinase PINOID 2 84 174 - -
Seca6g04653 465 FunFam protein kinase PINOID 175 243 - -
Seca6g04653 465 ProSiteProfiles Protein kinase domain profile. 86 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca6g04653 465 MobiDBLite consensus disorder prediction 1 32 - -
Seca6g04653 465 MobiDBLite consensus disorder prediction 12 32 - -
Seca6g04653 465 Coils Coil 123 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04653 Seca-Chr6 114102200 114104417 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04653 8 465 AGC Kinase Gene Family AT2G34650 66.307 0.0 600
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca6g04653 Pkinase 1.2e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04653 - - gmx:100795536 754.207