Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca6g04645 ATGAGGAGAAATTGCAATTTGGAACTTGGCCTTTTTCCACCCTACGATTCCAGCCACCGCAACCACCCCATGGTAGAAGAAGCCAGCCAGAGCCCAATACAAAATTACTTCCAACAGCAGCAGGAACAGCAACAGCCGATCACCATTTTCTATGATGGGAAAATTTGTGTTGCTGATGTCACAGAGCTTCAGCAGGCCAAATCAATCTTAATGCTTGCAAATAAAAAAGCACAAGAAAGAGTGAGGACACCAACGGGGTCAGAGCCATGTTCACCAACAGTAGCAGTGCAATCTCAATCTCATAATAATCAATTGTATAGCCCTGGGACTGGCCTTTCCATGAAGAGATCGTTGCAGCGGTTCCTCCAAAAGAGAAGGAATCGAGCCCAAGAAGCTTCGCCATACCATCACTAG 414 0.4614 MRRNCNLELGLFPPYDSSHRNHPMVEEASQSPIQNYFQQQQEQQQPITIFYDGKICVADVTELQQAKSILMLANKKAQERVRTPTGSEPCSPTVAVQSQSHNNQLYSPGTGLSMKRSLQRFLQKRRNRAQEASPYHH. 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca6g04645 137 SMART tify_2 40 75 IPR010399 -
Seca6g04645 137 Pfam tify domain 42 74 IPR010399 -
Seca6g04645 137 MobiDBLite consensus disorder prediction 84 112 - -
Seca6g04645 137 Pfam Jas motif 115 135 IPR018467 -
Seca6g04645 137 ProSiteProfiles Tify domain profile. 40 75 IPR010399 -
Seca6g04645 137 MobiDBLite consensus disorder prediction 79 112 - -
Seca6g04645 137 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 19 135 IPR040390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca6g04645 Seca-Chr6 113997998 114000473 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca6g04645 1 136 Tify Gene Family AT1G30135 42.754 5.41e-24 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Seca6g04645 tify 9.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca6g04645 - - gmx:100500349 191.43